CTD Data from the toothfish fishery at Heard Island and McDonald Island
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Australian vessels fishing in the Commonwealth managed fishery for Patagonian Toothfish and mackerel icefish in the Heard Island and MacDonald Island area deployed conductivity, temperature and depth (CTD) loggers attached to their fishing gear. In most cases CTDs were deployed on demersal longlines but in some cases they were attached to trawl nets and traps. Data were collected on five fishing vessels during the fishing seasons of 2019/20 and 2020/21 The data were collected with a CTD (Conductivity, Temperature and Depth Recorder) from the Sea Mammal Research Unit (SMRU) at St Andrew’s University Scotland. Files were downloaded with their TagConfig software in text (.txt) format. Recordings were made at (typically) 1 second intervals for the duration of the fishing event, recording data throughout the water column while setting the gear, then while fishing on the sea floor and again through the water column when the gear was retrieved. Each data file has data on date/time, pressure referenced to surface pressure (dbar), absolute pressure (dbar), temperature (°C), conductivity *mS/cm) and salinity (psu). The data are currently not linked to geographical coordinates which are confidential, but these may be able to be released on contact with the data owner and subject to appropriate confidentiality arrangements. Number of deployments: 2019/20: 25 2020/21: 27
CTD data collected during the SAZ-SENSE voyage, January-February 2007
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Metadata record for data from ASAC Project 2720 See the link below for public details on this project. The overall objective is to characterise Southern Ocean marine ecosystems, their influence on carbon dioxide exchange with the atmosphere and the deep ocean, and their sensitivity to past and future global change including climate warming, ocean stratification, and ocean ... acidification from anthropogenic CO2 emissions. In particular we plan to take advantage of naturally-occurring, persistent, zonal variations in Southern Ocean primary production and biomass in the Australian Sector to investigate the effects of iron addition from natural sources, and CO2 addition from anthropogenic sources, on Southern Ocean plankton communities of differing initial structure and composition. These samples were collected on the SAZ-SENSE scientific voyage of the Australian Antarctic Program (Voyage 3 of the Aurora Australis, 2006-2007 season). SAZ-SENSE VOYAGE AU0703 CTD DATA Oceanographic measurements were collected aboard Aurora Australis cruise au0703 (voyage 3 2006/2007, 17th January to 20th February 2007) as part of the "SAZ-SENSE" experiment south of Tasmania, between 43 degrees and 55 degrees south. A total of 109 CTD vertical profile stations were taken to various depths, focussing chiefly on the upper water column. Over 1300 Niskin bottle water samples were collected for the measurement of salinity, dissolved oxygen, nutrients (phosphate, nitrate+nitrite, silicate, ammonia and nitrite), dissolved inorganic carbon, alkalinity, particulate organic carbon/nitrogen/silicate, dissolved and particulate barium, thorium, dissolved organic carbon, ammonium, pigments, phytoplankton, bacteria, viruses, diatoms, amino acids, and other biological parameters (list incomplete), using a 24 bottle rosette sampler. Near surface current profile data were collected by a ship mounted ADCP. Data from the array of ship's underway sensors are included in the data set. This report describes the processing/calibration of the CTD and ADCP data, and details the data quality. An offset correction is derived for the underway sea surface temperature and salinity data, by comparison with near surface CTD data.
CTD Data from the Rectangular Midwater Trawl collected during the BROKE-West voyage of the Aurora Australis, 2006
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The CTD data were acquired when the RMT instrument was in the water. Data Acquisition: There is a FSI CTD sensor housed in a fibreglass box that is attached to the top bar of the RMT. The RMT software running in the aft control room establishes a Telnet connection to the aft control terminal server which connects to the CTD sensor using various hardware connections. Included are the calibration data for the CTD sensor that were used for the duration of the voyage. The RMT software receives packet of CTD data and every second the most recent CTD data are written out to a data file. Additional information about the motor is also logged with the CTD data. Data are only written to the data file when the net is in the water. The net in and out of water status is determined by the conductivity value. The net is deemed to be in the water when the conductivity averaged over a 10 second period is greater than 0. When the average value is less than 0 the net is deemed to be out of the water. New data files were automatically created for each trawl. Data Processing: Adjustment of the net open time. If the net did not open when first attempted then the net was 'jerked' open. This meant the winch operator adjusted the winch control so that it was at maximum speed and then turned it on for a very short time. This had the effect of dropping the net a short distance very quickly. This dislodges the net hook from its cradle and the net opens. The scientist responsible for the trawl would have noted the time in the trawl log book that the winch operator turned on the winch to jerk the net. The data files will have started the 'net open' counter 10 seconds after the user clicks the 'Net Open' button. If this time did not match the time written in the trawl log book by the scientist, then the net open time in the CSV file was adjusted. The value in the 'Net Open Time' column will increment from the time the net started to open to the time that the net started to close. The pressure was also plotted to ensure that the time written down in the log book was correct. When the net opens there is a visible change in the CTD pressure value received. The net 'flies' up as the drag in the water increases as the net opens. If the time noted was incorrect then the scientist responsible for the log book, So Kawaguchi, was notifed of the problem and the data file was not adjusted. Removing unused columns from the original log files. The original log files that were produced by the RMT software were trimmed to remove any columns that did not pertain to the CTD data. These columns include the motor information and the ITI data. The ITI data gives information about the distance from the net to the ship but was not working for the duration of the BROKE-West voyage. This trimming was completed using a purpose built java application. This java class is part of the NOODLES source code. Dataset Format: The dataset is in a zip format. There is a .CSV file for each trawl, 125 in total. There were 51 Routine trawls and 74 Target Trawls. The file naming convention is as follows: [Routine/Target]NNN-rmt-2006-MM-DD.csv Where, NNN is the trawl number from 001 to 124. MM is the month, 01 or 02 DD is the day of the month. Also included in the zip file are the calibration files for each of the CTD sensors and the current documentation on the RMT software. Each CSV file contains the following columns: Date (UTC) Time (UTC) Ship Latitude (decimal degrees) Ship Longitude (decimal degrees) Conductivity (mS/cm) Temperature (Deg C) Pressure (DBar) Salinity (PSU) Sound Velocity (m/s) Fluorometer (ug/L chlA) Net Open Time (mm:ss) If the net is not open this value will be 0, else the number of minutes and seconds since the net opened will be displayed. When the user clicks the 'Net Open' button there is a delay of 10 seconds before the net starts to open. The value displayed in the 'Net Open Time' column starts incrementing once this 10 seconds delay has passed. Similarly when the user
Extract of data from the sea ice measurements database - 1985-2007
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These data have been extracted from an Australian Antarctic Data Centre application, "Sea ice measurements database". The application has now been discontinued. The download file contains the extracted data, plus a sample data entry form. The extracted data are simply database tables that have been converted to csv format. Taken from the main page of the application: This archive contains in-situ measurements of Antarctic sea ice and snow cover properties, collected by many national programs over the past several decades. The data include physical, biological and biogeochemical measurements on ice cores and snow pit samples, as well as ice and snow thickness measurements from drilled transects across ice floes. The data are from all regions of the Antarctic pack ice in many different months of the year. Data can be submitted online using a standard proforma that can be downloaded from this site. The development of this site was a key recommendation from the International Workshop on Antarctic Sea Ice Thickness, held in Hobart, Australia in July 2006.
Southern Ocean CTD data collected from the CASO cruise of the Aurora Australis, 2007-2008
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Taken from the accompanying report: Oceanographic measurements were collected aboard the Aurora Australis on cruise au0806 (voyage 6 2007/2008, 22nd March 2008 to 17th April 2008). This cruise completed the CASO oceanographic program begun on the CEAMARC cruise (au0803, voyage 3 2007/2008), with a full occupation of the SR3 transect between Antarctica and Tasmania. CASO program objectives were: 1. to measure changes in water mass properties and inventories throughout the full ocean depth between Australia and Antarctica along 140oE (the CLIVAR/WOCE repeat section SR3), as part of a multi-national International Polar Year program to obtain a circumpolar snapshot of the Southern Ocean in austral summer 2007-8; 2. to estimate the transport of mass, heat and other properties south of Australia, and to compare results to previous occupations of the SR3 line and other sections in the Australian sector; 3. to deploy moorings near the Adelie Depression (142-145oE) as part of a joint Australia-France-Italy program to monitor changes in the properties and flow of Adelie Land Bottom Water; 4. to identify mechanisms responsible for variability in ocean climate south of Australia. The CASO program (with a full occupation of the SR3 transect) was originally scheduled for a single cruise. The shipping schedule was re-arranged following an unexpected period in drydock, due to a problem with the ship's thrusters, and as a result the CASO program was split over the two cruises. Several of the southern stations occupied on the first cruise au0803 were repeated on the second cruise au0806, to minimise the impact on the data set of the time gap between the cruises. A total of 131 CTD vertical profile stations were taken on au0803, and 73 CTD station were taken on au0806, most to within 20 metres of the bottom. During the 2 cruises, over 2900 Niskin bottle water samples were collected for the measurement of salinity, dissolved oxygen, nutrients (phosphate, nitrate+nitrite and silicate), 18O, CFC's, dissolved inorganic carbon, alkalinity, 14C, dissolved organic carbon, density (i.e. analysis of the effect of water composition on water density), germanium/silica/boron isotopes, trace metals, neodymium, chlorophyll-a, cell counts, pigments, genetic analyses, and other biological parameters, using a 24 bottle rosette sampler. Full depth current profiles were collected by an LADCP attached to the CTD package, while upper water column current profile data were collected by a ship mounted ADCP. Data were also collected by the array of ship's underway sensors. This report describes the processing/calibration of the CTD data, and details the data quality. An offset correction is derived for the underway sea surface temperature and salinity data, by comparison with near surface CTD data. CTD station positions are shown in Figures 1 and 2, while CTD station information is summarised in Table 1. Mooring and drifter deployments/recoveries are summarised in Table 14. Mooring data from the Adelie Depression deployments are discussed in the mooring data reports Rosenberg (unpublished report, 2009) and Meijers (unpublished report, 2009). Further cruise itinerary/summary details can be found in the voyage leader reports (Australian Antarctic Division unpublished reports: Riddle, V3 2007/08 VL report; Rintoul, V6 2007/08 VL report). Hydrochemistry and CFC cruise reports are in Appendix 1 and Appendix 2. Details about the data are available in a readme file and a full report in the download file.
CTD Niskin data collected from the BROKE-West voyage of the Aurora Australis, 2006
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3 litres of seawater were collected every 2nd CTD (conductivity, temperature and depth) cast on every CTD transect of the BROKE-West voyage. 7 CTD transects were completed on the BROKE-West voyage, all on southwards legs. Samples were collected at 6 depths in the top 200 m of the water column using niskin bottles. 2 litres were filtered through polycarbonate filters and 1 litre was filtered through a fibreglass filter. Chemical digestion of the polycarbonate filter enabled us to determine the particulate silicon concentration for each sample (using the nutrient autoanalyser onboard the Aurora Australis, see hydrochemistry section), fibreglass filters have been dried and stored for CHN analysis back on shore. This work was completed as part of ASAC projects 2655 and 2679 (ASAC_2655, ASAC_2679).
CTD data from cruise ta0803 of the RV Tangaroa
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This is the CTD data set from RV Tangaroa cruise tan0803, 26th March to 26th April 2008, along the Macquarie Ridge. This was the recovery cruise for the Macquarie Ridge mooring array. The primary aims of the oceanographic program were: recovery of a New Zealand/Australia collaborative mooring array spanning two gaps in the Macquarie Ridge north of Macquarie Island, and occupation of a CTD transect running south from New Zealand to 60o S along the Macquarie Ridge. Eight of the nine moorings were successfully recovered. The mooring at site number 3 (NIWA gear) was unrecoverable, with acoustic release communication indicating only the bottom portion of the mooring remaining and lying flat on the ocean floor. Complete details of the mooring work are included in a separate mooring recovery report. Mooring instruments were downloaded on the ship, with a very high percentage of successful data recording. Ship maneouvering and deck operations all went well throughout the recoveries. Shiptime at the mooring locations was well spent, with daylight hours dedicated to mooring recovery, and night time used for nearby CTD, swath mapping, coring and sea mount activities, and for unspooling of mooring line. The additional container space created on the top deck portside (above the trawldeck) proved extremely valuable for stowage of mooring gear. 58 CTD's were completed during the cruise, including 54 along the main transect, and 4 at coring locations (part of the geology program). Main transect CTD's included 2 across the northern mooring group, and 3 across the southern mooring group. Most casts were to within 25 metres of the bottom. Instrument problems resulted in incomplete casts at the following locations: CTD 9, CTD 11 and CTD 27. CTD 46 was skipped due to bad weather, while further instrument problems prevented a cast at the southernmost site (CTD 50). Niskin bottles were sampled at each station for dissolved oxygen and salinity, with a subset of stations selected for 18O sampling. Some stations were additionally sampled for DIC, alkalinity, 13C, silicate, and U/Th, as part of the geology program. Note that dissolved oxygen data have been removed from this data set, as oxygen bottle samples were never analysed.