This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project C5 - "Quantification of risk from shipping to large marine fauna across Australia". For specific data outputs from this project, please see child records associated with this metadata. Given the substantial increases in coastal/port development along the Australian coastline, and associated increase in recreational and commercial shipping, there is an increasing potential for adverse interactions with marine species. Two risks associated with these activities for large marine fauna are ship collisions and the impact of chronic ocean noise. Research is urgently needed to quantify these risks in both a spatial and temporal context to help develop and implement appropriate management strategies. This project aims to provide directed science (species- and area-specific) to inform decision-making by the Department of Environment in its application of the EPBC Act. Planned Outputs • Initial scoping report of ship strike risk summarising what is currently known about species that were tentatively nominated as being at-risk for ship strike, the data available, shipping size/type data needed and recommendations on what species to investigate further with a qualitative ranking from easiest to most difficult. • AIS data base for the Australian EZ and initial processing protocols. • Full Australia-wide fine-scale shipping density and average speed maps for 2012 – present including information such as vessel length, beam and draft. This data will directly feed into future noise mapping. • A national map of approximate density of small vessel distribution based on available proxies such as population density, boat registration data and boat ramp locations. • A suite of distribution and density surfaces for the various species nominated during Phase 1; • Spatial and temporal risk profiles for selected species. The risk maps will range from full fine-scale maps when data is present, to coarse-scale ‘regions of concern’ for species where distribution data is limited to approximate extent. • An updated version of a database of ship strikes (historical and recent) within the Australian EEZ Report on national ship strike risk to the limits of current data and knowledge. • Report on our ship strike risk methodological developments • Report on initial shipping noise mapping • Report on the recommendations and findings of the 2017 workshop on chronic noise in the marine environment.

This record provides an overview of the scope of NESP Marine Biodiversity Hub Project E1 - "Guidelines for analysis of cumulative impacts and risks to the Great Barrier Reef". No raw data products are anticipated for this project. The project will develop guidance for the analysis of cumulative impacts and risks to the environmental, social and economic values of the GBR. The project will use existing information to develop guidance for use by GBRMPA, DoEE, the Queensland Government and proponents of future development proposals. The project will build on the work undertaken in the GBR Strategic Assessment and support works undertaken under the Reef 2050 plan. The guidance will provide a practical science-based approach to assessment of cumulative risks to the Reef. Research will focus on providing a general and repeatable approach to be applied at the whole-of-reef scale (to meet planning, assessment and reporting requirements of the GBRMPA) and also at the development-site-scale (to meet the environmental assessment requirements of the GBRMPA and future proponents). The guidance will be developed in close collaboration with the GBRMPA and DoEE to ensure it is practical and compatible with relevant legislation and policy applicable to proposed actions within the GBR. The project will include a case study focused on attributing impacts of pressures and their cumulative impacts on shallow-water coral reefs of eastern Australia (including cumulative impacts for the whole-of-GBR). It will also examine how this could be applied to shallow temperate reefs follow recent risk assessments conducted in NSW. Research is primarily designed to meet the specific needs of GBRMPA and future proponents. NSW DPI, QLD Government and Parks Australia, may also benefit from the case study and insights to assessment of cumulative impacts. Planned Outputs • Case Study Report on GBR & Coral Sea reefs pressure analysis. • Final report - guidance for analysis of cumulative impacts and risk

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project C2 - "Continental-scale tracking of threats to shallow Australian reef ecosystems". For specific data outputs from this project, please see child records associated with this metadata. The project will integrate Australia’s largest, most detailed datasets of shallow-water tropical and temperate marine biodiversity, and assess how pollution, fishing, rising sea temperatures and introduced species are impacting associated natural values. An initial outcome will be the identification of state-of-the-environment indicators for inclusion in the 2016 State of the Environment report, with subsequent activities aimed at contributing additional data products needed for other NESP projects, Parks Australia, and the Essential Environmental Measures initiative. The project will also describe a national shallow-water baseline of biodiversity in Commonwealth Marine Reserves for assessment of change through the long term. Planned Outputs Publications describing: • Environmental values at all sites investigated in Commonwealth waters by Reef Life Survey divers • Compatibility of survey data obtained through LTMP, RLS and LTMPA programs, and corrections factors needed when linking outputs of these monitoring programs • Time series data depicting interannual variation over the past two decades in ecological indicators specific to individual threats • Relationships between anthropogenic stressors and reef condition, with emphasis on impacts of sewage and heavy metal pollution, fishing, warming sea temperature, urbanisation and introduced species • Sensitive and cost effective indicators of threats to environmental condition. • Coherent marine ecological data streams that feed into SoE reporting, the Essential Environmental Measures initiative, and future evaluation of Commonwealth Marine Reserves.

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project A11 - "Shark action plan". No datasets were generated by this project. Conservation of elasmobranch species (sharks and rays) is an increasing priority globally, including Australia, as evidence of overexploitation of some species becomes apparent. Common issues and threats among elasmobranch species may improve management if considered holistically. This project will produce a Shark Action Plan assessing requirements for improved management including a summary of current status across the taxa, guidelines for reducing impacts and improving management, and identification of key knowledge gaps impeding conservation and management. This Plan will help guide policy for Australian elasmobranchs developed by DoEE and fishery managers. On-ground conservation will be developed from recommendations in this plan. Outputs • Shark Action Plan relevant to management of Australian elasmobranchs including an assessment of current threats, prioritised conservation and management actions for at-risk species and guidance on future management and data needs [written] • Manuscripts for scientific journals outlining the results of project components (eg, Conservation Dependent species framework) [written]

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project B4 - "Underpinning the repair and conservation of Australia’s threatened coastal-marine habitats". For specific data outputs from this project, please see child records associated with this metadata. The primary objective of this project is to provide essential research to underpin restoration efforts to increase the success and efficiency of shellfish and saltmarsh repair. The secondary objective is to quantify clear easily understood benefits of repair to further increase groundswell, Indigenous and interest group support for repair efforts. For Phase 2 this involves: Shellfish reefs 1. Providing critical research to underpin the success of companion works investments into Sydney rock oyster (Saccostrea glomerata) restoration in Qld and NSW 2. Ongoing engagement with Indigenous groups, focused around especially SEQ and NSW to match the emphasis on Sydney rock oyster; 3. Through the Nature Conservancy, linking to shellfish restoration works in Port Phillip Bay (Vic), St Vincent’s Gulf (SA) and Oyster Harbour (WA) so that a National Business Case complete with examples of successes to date can be developed; 4. Underpinning this succinct business case with an information base for any follow-on activities such as assessment of shellfish reefs as an endangered community. Salt marshes 1. Estimating the benefits of salt marsh repair for an easily publicly understood indicator - prawn species. 2. Undertaking this work in NSW and Qld in parallel with proposed repair works so that very concrete case studies are available to demonstrate the benefits of repair. Planned Outputs Shellfish reef project outputs: • A scientific paper published in an eminent, peer-reviewed journal describing the ecology and biodiversity of shellfish reefs and biodiversity comparison against other marine habitats; • A scientific paper published in an eminent, peer-reviewed journal which identifies trajectories of change from past baselines to current condition and develops achievable targets for repair; • News stories, web articles, social media, brochures and oral presentations at national/international conferences, which communicate the key research findings to coastal stakeholders such as fishers, divers, NRM groups and government agencies; • News stories, web articles and social media which communicate the importance of shellfish reefs and shellfish food sources to Indigenous Australians; • Summary of community benefit and business propositions for coastal wetland repair expanding on the vision of a rejuvenated coastal ecology and written at the level required for input to various investors, agencies and public policy; • Updates at the end of 2016 as part of stakeholder engagement and continued communication. Salt marsh prawn productivity outputs: • A scientific paper published in an eminent, peer-reviewed journal quantifying and contrasting prawn productivity in healthy and degraded salt marsh communities in tropical and temperate environments; • Publicly accessible communication resources (brochures, social media, media releases and webpages) which articulate simply the prawn productivity values of salt marshes and links this to the need for the protection, conservation and restoration of degraded salt marsh communities.

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project A6 - "Prioritisation of research and management needs for Australian elasmobranch species". For specific data outputs from this project, please see child records associated with this metadata. NERP successfully demonstrated new ways to get the raw ingredients for evidence-based management of previously intractable species: abundance, survival, connectivity. But there is still a need to explore/demonstrate how management can use these tools (e.g. adaptive control of bycatch, or deciding if more monitoring is needed), and which species are suitable. This project comprises (i) a workshop to re-assess Australian shark and ray species in terms of degree-of-concern, state-of-knowledge-for-management, and feasibility-of-filling-knowledge-gaps; and (ii) a desk study exemplifying one pathway to management use. In 2016, we will work with DoE to prioritize species for research and explore more management pathways. Planned Outputs • A report outlining workshop findings, recommendations relative to data gaps and effective research approaches to address these gaps. • A paper demonstrating how management can use new methods to examine adaptive monitoring of bycatch to assess impact • Presentation of results to key stakeholders and end users

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project C1 - "Improving our understanding of pressures on the marine environment". For specific data outputs from this project, please see child records associated with this metadata. The marine environment in Australia is influenced by a wide range of different pressures that impact on different parts of the marine ecosystem in different ways. This project aims to assist DoE, and other research users, to improve understanding of the potential impacts of anthropogenic disturbance to marine conservation values by providing up-to-date data and analyses on the spatial distribution of pressures and trends. The research is designed to inform decision making under the EPBC Act (acceptability of proposed activities, evaluation of effectiveness of mitigation measures) on NMES (including Key Ecological Features), implementation of multiple strategies in four Marine Bioregional Plans (i.e. strategies B, C, D and F), management of Commonwealth Marine Reserves (e.g. strategies 1 and 2 in the South-east Commonwealth Marine Reserve Network Management Plan 2013-23) and State of the Environment reporting. The project will involve a re-examination of the pressure analyses undertaken through the marine bioregional planning program and the 2011 SOE Report (marine chapter) and determine where pressure mapping can be improved to enhance those analyses (for instance for those pressures for which data deficiency was identified). It will also examine the strengths and weaknesses of the different pressure assessment methodologies used by both the MBP process and the SOE 2011 process and propose a methodology that can support both initiatives into the future. The project will provide pressures profiles for CMRs and will assist Parks Australia in understanding how pressures interact with the values they identify in CMRs. The project will also consider relative impact, and how spatial mapping can assist in understanding both relative and cumulative impact. As an adjunct to the cumulative impact investigation, the project will also investigate how changes in socio-economic valuing of conservation values may influence the degree of investment in understanding and management of cumulative impact. This particular work will further the risk-based approach to cumulative impact that was investigated under the NERP Hub. Planned Outputs • Produce description of summary of changes and trends in pressures on the commonwealth marine environment in the offshore marine environment from 1991 to 2010. • Production of inshore and offshore pressure summaries to inform SOE reporting (2011-2015) • Produce description of trends in pressures acting on the commonwealth marine environment (onshore & offshore) between 1991 & 2015, with refined summaries for all KEFs and CMRs. • Distribute pressure data and pressure data summaries through NPEI compliant data infrastructure. • Produce analysis and description of the likely future states (for example, climate (interannual and decadal), shipping, modification of fisheries activity, coastal eutrophication) • Re-evaluation of the pressure assessments published in the 2012 Marine Bioregional Plans , ensuring consistency of output, updating the profiles for all KEFs • Report on the changing socio-economic valuing of conservation values to the concept of acceptable impact, or acceptable risk of impact • Report on a risk based framework to manage the uncertainty information bases for different decision making requirements with example case

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project B2 - "Analysis and elicitation to support State of the Environment reporting for the full spectrum of data availability". No data outputs are expected for this project. The availability and quality of observation data that may be used to support State of the Environment reporting lies on a spectrum from: (i) high quality (e.g. Reef Life Survey, Long term reef monitoring programme, Temperate Reef Monitoring programme, state-based MPA monitoring programmes); (ii) moderate quality (e.g. continuous plankton recorder, occasional by catch surveys); (iii) low quality (anecdotal information) to (iv) expert beliefs but no empirical observations. We currently lack a principled process for utilising and merging data of varying quality and from different sources to form a national perspective to support State of the Environment reporting. The key unifying principle to support such a process is the extent to which the available data is representative of the environmental asset in question. As the extent to which the empirical observations accurately represent the state of the asset in both space and time diminishes, so the reliance on expert opinion increases, to the limit where the only available information is expert opinion. This project will provide an over-arching framework to consider these issues, develop practical protocols for blending different data streams with or without experts’ judgement as appropriate, and thereby provide a foundation for improving State of Environment reporting for all types of data sources, from high to low quality. It will do this by developing and applying protocols to support development of the marine chapter of SoE 2106. This currently being developed within a separate CSIRO funded project. The project will use the experience of developing this chapter to make recommendations about appropriate methodologies for future environmental reporting. Importantly the statistical approach and analysis principles will be consistent regardless of the amount or quality of the information available. As a result the framework and analysis methods will remain relevant, even as the quality and quantity of environmental data at the department’s disposal changes. This will provide the consistency of analysis and reporting that is essential to SoE. Expected Outcomes • The provision of two or three examples that demonstrate a unified approach to the use of expert opinion in SoE reporting. These examples will be identified in close collaboration with the Department and will be developed in time to support the marine chapter of 2016 State of the Environment report, contingent on the availability of resources in the second year of the project and timely interaction with the department. • Assessments of the status and trends of environmental assets in the State of the Environment report will be based on a principled and statistically defensible process that can merges and utilises data from all sources including expert opinion.

This record provides an overview of the NESP Marine and Coastal Hub small-scale study - NESP Marine and Coastal Hub scoping study: New approaches to monitoring. Observations of marine species have rapidly diversified over the last decade with increasing numbers of observations collected either through citizen science programs or opportunistically by citizens and then submitted into public databases. The expectation of citizens contributing those data is that the data is incorporated into formal analyses and utilised either for scientific or management purposes, with outcomes that improve current understanding and conservation of marine species. Further, there is increasing reliance on more informal and publicly driven approaches to the collection of observations given the costs of conducting formal surveys particularly if accessing remote regions, or if repetition of collection (across seasons or years) is needed. Integrating opportunistic observations with more formally collected observations (e.g. those collected through robust survey designs), however, is not straightforward. Traditional approaches to estimating population abundance, changes in species assemblages, abundances and distributions through time require some understanding of the effort associated with those observations and how that effort is also distributed through time; information that is missing from opportunistic observations, given the nature of those observations. Further, many opportunistically collected datasets do not meet the statistical assumptions of many analytical approaches that might be applied to scientific datasets. As a result, opportunistic observations are underutilised at present and are largely only used qualitatively within research applications. To take full advantage of this rapidly expanding resource and ensure that efforts associated with the collection of these observations are not wasted, methods that can integrate opportunistically collected data with scientific datasets are needed. This project represents the first stage in developing integrative methods. It will bring together data holders, quantitative ecologists and statisticians to explore potential approaches that might be applied to facilitate the integration of opportunistic datasets with scientific datasets. In doing so, it will identify what datasets might be best suited to the development of integrative approaches (and what might not) and outline a pathway for developing those methods that could be implemented through a future project Planned Outputs • Workshop • Final technical report with analysed data and a short summary of recommendations for policy makers of key findings [written]

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project A3 - "A national assessment of population status of White Sharks". For specific data outputs from this project, please see child records associated with this metadata. White sharks are listed as Vulnerable under the EPBC Act and the subject of a national recovery plan, yet there is still no effective way to assess their population status and thus no way of determining the efficacy of conservation actions. Recent debate due to various human-shark interactions has highlighted the need for further information. This Project provides a national assessment of white shark population size and status in order to establish the efficacy of existing recovery actions and provide a scientifically sound and rational basis from which to develop policies that balance conservation objectives and public safety. Planed Outputs • Tools to refine and integrate CK-MR, electronic tagging distribution and species demographic data for population assessments of a key threatened species at a national scale (combining knowledge developed under this project combined with similar techniques being applied under NESP to euryhaline sharks and planned for grey nurse sharks). • National estimates of (census) population size and trend for white sharks in Australian waters (western and eastern populations respectively) are established that fulfil the highest priority actions of the National Recovery Plan. • New genetic and statistical tools trialled for the estimation of historical population trend from contemporary tissue samples for key species for which other methods of population assessment are unreliable or unavailable. • Provide information that identifies movement corridors, hotspots and contributes to management strategies for top-order marine predators • Estimate juvenile white shark survival and abundance for input into integrated national population assessment models in order to refine population estimates. • National-level information on habitat use, behaviour and spatial dynamics of white sharks at various scales used to provide the scientific underpinning for government decisions and policies as well as provide for more informed public debate. • Identify national strategies to monitor white shark populations. • The project will provide peer-reviewed additions to the scientific literature that will add to the science-support for the development and implementation of policies to support the ecologically sustainable management of Australia’s marine environment.