This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project A12 - "Scoping a seascape approach to managing and recovering Northern Australian threatened and migratory marine species". For specific data outputs from this project, please see child records associated with this metadata. Northern Australia is the current focus of substantial economic development, which has the potential to impact biodiversity and cultural values. The Northern Seascape scoping project will assess the status of knowledge of EPBC-listed Threatened and Migratory Marine species, and pressures, Indigenous priorities, habitats, fisheries bycatch, and EPBC referrals in relation to them across the North Marine Bioregion (coast to EEZ edge). The focus will be at the multiple taxa level, including elasmobranchs, shorebirds, turtles and cetaceans. The project will scope research needs and directions for a broad Northern Seascape project (2018–2020), by identifying future research hotspots. Planned Outputs • Maps of Threatened and Migratory Marine species occurrence and habitats, and a gap analysis of research and data needs • Maps of state and trends in pressures and Threatened and Migratory Marine species, and the intersection between them • A report on Indigenous marine research and management priorities for Threatened and Migratory Marine species • Maps and time-series graphs that depict the extent and timing of past changes in coastal habitats that are important for TMM species • Identification of Threatened and Migratory Marine species bycatch and bycatch mitigation research priorities • Identification of EPBC referral spatial and species trends • Data, data visualisation and summaries available online through an appropriate web-based portal and/or existing internal DoEE information products • Project report synthesizing northern Australian Threatened and Migratory Marine species, pressures, Indigenous priorities, coastal habitat change, fisheries bycatch mitigation research priorities, and EPBC referral trends, and the identification of future research hotspots

Seven case study locations (Keep, Daly, Roper, McArthur, Flinders, and Gilbert River estuaries, and Darwin Harbour) were used to test the utility of the Australian Landsat data archive in the Digital Earth Australia analysis platform for characterising and monitoring the condition and change in coastal habitats. A suite of analyses was undertaken including: assessing the extent of different coastal habitats, detecting coastal change including change in mangrove communities, and the distribution of intertidal areas. The work was successful in: (a) generating baseline information for the case study areas; and, (b) developing valuable monitoring tools for future use.

This report provides a preliminary assessment of the utility of a satellite remote sensing approach for the identification and characterisation of coastal habitats that are critical for threatened and migratory species in northern Australia. This work is part of the Habitats research theme in the A12 Northern Seascapes Scoping Project. The Australian Landsat archive in the Digital Earth Australia (DEA) analysis platform for satellite imagery was utilised to demonstrate its potential for mapping intertidal areas and mangrove extent, and changes over time in the extent of coastal landforms and habitats. Seven estuaries were examined, Darwin Harbour and the Keep, Daly, Roper, Macarthur, Flinders and Gilbert River estuaries. The estuaries were selected by the A12 Project team because they are known to provide important areas for the species of interest. Features of importance to shorebird populations were a focus. The focus of this scoping work was to utilise the DEA Landsat archive to build understanding of the effects of tidal dynamics on intertidal habitats across this region of large and complex tides, examine approaches to mapping the extent of key coastal habitats, and test the potential of the archive to detect coastal habitat change, in particular mangrove. In northern Australia, cloud interference can make it difficult to obtain clear satellite imagery. To avoid this issue, the geometric median of surface reflectance values was used to produce crisp, cloud-free composite images that depict the maximum observed tidal extent in the seven estuaries. Tide-tagging of satellite imagery was also successfully employed to allow any tide induced change to be removed from change-detection analyses and clearly depict the intertidal extent. Application of the Intertidal Extent Model in the DEA enabled the extent and morphology of estuarine intertidal environments to be mapped. The DEA also enabled habitat change change detection using the fully processed, high density, three decade long Landsat time series. The results clearly depict the dynamic nature of some areas, including large-scale rapid island growth and mangrove expansion (e.g. Keep River and Gilbert River estuaries), gradual long-term expansion of mangrove (Flinders River and McArthur River estuaries), and estuaries with areas of rapid recent die back of mangrove (Roper River and Flinders estuaries). This information is important for the management of key species as well decisions around coastal developments. With Landsat and new satellite data streams (e.g. Sentinal 2) continually being added to the DEA, this time-series analysis approach could be developed into an effective habitat extent and condition monitoring tool for northern Australia. The image products and analysis tools employed in this study demonstrate the potential utility of DEA for mapping the extent and dynamics of key coastal and estuarine habitats utilised by threatened and migratory species. To better inform the management of these species, a key next step in this approach is to utilise ground-validation data to enable these habitats to be robustly classified and quantified using the Landsat archive. This analysis should provide important baseline information and enable the extent and condition of key habitats to be monitored. Preferred Citation: Phillips, C., Lymburner, L. & Brooke, B. (2018). Characterising northern estuaries using Digital Earth Australia. Report to the National Environmental Science Programme, Marine Biodiversity Hub. Geoscience Australia.

This report provides a preliminary assessment of the utility of a satellite remote sensing approach for the identification and characterisation of coastal habitats that are critical for threatened and migratory species in northern Australia. This work is part of the Habitats research theme in the A12 Northern Seascapes Scoping Project. The Australian Landsat archive in the Digital Earth Australia (DEA) analysis platform for satellite imagery was utilised to demonstrate its potential for mapping intertidal areas and mangrove extent, and changes over time in the extent of coastal landforms and habitats. Seven estuaries were examined, Darwin Harbour and the Keep, Daly, Roper, Macarthur, Flinders and Gilbert River estuaries. The estuaries were selected by the A12 Project team because they are known to provide important areas for the species of interest. Features of importance to shorebird populations were a focus. The focus of this scoping work was to utilise the DEA Landsat archive to build understanding of the effects of tidal dynamics on intertidal habitats across this region of large and complex tides, examine approaches to mapping the extent of key coastal habitats, and test the potential of the archive to detect coastal habitat change, in particular mangrove. In northern Australia, cloud interference can make it difficult to obtain clear satellite imagery. To avoid this issue, the geometric median of surface reflectance values was used to produce crisp, cloud-free composite images that depict the maximum observed tidal extent in the seven estuaries. Tide-tagging of satellite imagery was also successfully employed to allow any tide induced change to be removed from change-detection analyses and clearly depict the intertidal extent. Application of the Intertidal Extent Model in the DEA enabled the extent and morphology of estuarine intertidal environments to be mapped. The DEA also enabled habitat change change detection using the fully processed, high density, three decade long Landsat time series. The results clearly depict the dynamic nature of some areas, including large-scale rapid island growth and mangrove expansion (e.g. Keep River and Gilbert River estuaries), gradual long-term expansion of mangrove (Flinders River and McArthur River estuaries), and estuaries with areas of rapid recent die back of mangrove (Roper River and Flinders estuaries). This information is important for the management of key species as well decisions around coastal developments. With Landsat and new satellite data streams (e.g. Sentinal 2) continually being added to the DEA, this time-series analysis approach could be developed into an effective habitat extent and condition monitoring tool for northern Australia. The image products and analysis tools employed in this study demonstrate the potential utility of DEA for mapping the extent and dynamics of key coastal and estuarine habitats utilised by threatened and migratory species. To better inform the management of these species, a key next step in this approach is to utilise ground-validation data to enable these habitats to be robustly classified and quantified using the Landsat archive. This analysis should provide important baseline information and enable the extent and condition of key habitats to be monitored. Preferred Citation: Phillips, C., Lymburner, L. & Brooke, B. (2018). Characterising northern estuaries using Digital Earth Australia. Report to the National Environmental Science Programme, Marine Biodiversity Hub. Geoscience Australia.

This report provides a preliminary assessment of the utility of a satellite remote sensing approach for the identification and characterisation of coastal habitats that are critical for threatened and migratory species in northern Australia. This work is part of the Habitats research theme in the A12 Northern Seascapes Scoping Project. The Australian Landsat archive in the Digital Earth Australia (DEA) analysis platform for satellite imagery was utilised to demonstrate its potential for mapping intertidal areas and mangrove extent, and changes over time in the extent of coastal landforms and habitats. Seven estuaries were examined, Darwin Harbour and the Keep, Daly, Roper, Macarthur, Flinders and Gilbert River estuaries. The estuaries were selected by the A12 Project team because they are known to provide important areas for the species of interest. Features of importance to shorebird populations were a focus. The focus of this scoping work was to utilise the DEA Landsat archive to build understanding of the effects of tidal dynamics on intertidal habitats across this region of large and complex tides, examine approaches to mapping the extent of key coastal habitats, and test the potential of the archive to detect coastal habitat change, in particular mangrove. In northern Australia, cloud interference can make it difficult to obtain clear satellite imagery. To avoid this issue, the geometric median of surface reflectance values was used to produce crisp, cloud-free composite images that depict the maximum observed tidal extent in the seven estuaries. Tide-tagging of satellite imagery was also successfully employed to allow any tide induced change to be removed from change-detection analyses and clearly depict the intertidal extent. Application of the Intertidal Extent Model in the DEA enabled the extent and morphology of estuarine intertidal environments to be mapped. The DEA also enabled habitat change change detection using the fully processed, high density, three decade long Landsat time series. The results clearly depict the dynamic nature of some areas, including large-scale rapid island growth and mangrove expansion (e.g. Keep River and Gilbert River estuaries), gradual long-term expansion of mangrove (Flinders River and McArthur River estuaries), and estuaries with areas of rapid recent die back of mangrove (Roper River and Flinders estuaries). This information is important for the management of key species as well decisions around coastal developments. With Landsat and new satellite data streams (e.g. Sentinal 2) continually being added to the DEA, this time-series analysis approach could be developed into an effective habitat extent and condition monitoring tool for northern Australia. The image products and analysis tools employed in this study demonstrate the potential utility of DEA for mapping the extent and dynamics of key coastal and estuarine habitats utilised by threatened and migratory species. To better inform the management of these species, a key next step in this approach is to utilise ground-validation data to enable these habitats to be robustly classified and quantified using the Landsat archive. This analysis should provide important baseline information and enable the extent and condition of key habitats to be monitored. Preferred Citation: Phillips, C., Lymburner, L. & Brooke, B. (2018). Characterising northern estuaries using Digital Earth Australia. Report to the National Environmental Science Programme, Marine Biodiversity Hub. Geoscience Australia.

This report provides a preliminary assessment of the utility of a satellite remote sensing approach for the identification and characterisation of coastal habitats that are critical for threatened and migratory species in northern Australia. This work is part of the Habitats research theme in the A12 Northern Seascapes Scoping Project. The Australian Landsat archive in the Digital Earth Australia (DEA) analysis platform for satellite imagery was utilised to demonstrate its potential for mapping intertidal areas and mangrove extent, and changes over time in the extent of coastal landforms and habitats. Seven estuaries were examined, Darwin Harbour and the Keep, Daly, Roper, Macarthur, Flinders and Gilbert River estuaries. The estuaries were selected by the A12 Project team because they are known to provide important areas for the species of interest. Features of importance to shorebird populations were a focus. The focus of this scoping work was to utilise the DEA Landsat archive to build understanding of the effects of tidal dynamics on intertidal habitats across this region of large and complex tides, examine approaches to mapping the extent of key coastal habitats, and test the potential of the archive to detect coastal habitat change, in particular mangrove. In northern Australia, cloud interference can make it difficult to obtain clear satellite imagery. To avoid this issue, the geometric median of surface reflectance values was used to produce crisp, cloud-free composite images that depict the maximum observed tidal extent in the seven estuaries. Tide-tagging of satellite imagery was also successfully employed to allow any tide induced change to be removed from change-detection analyses and clearly depict the intertidal extent. Application of the Intertidal Extent Model in the DEA enabled the extent and morphology of estuarine intertidal environments to be mapped. The DEA also enabled habitat change change detection using the fully processed, high density, three decade long Landsat time series. The results clearly depict the dynamic nature of some areas, including large-scale rapid island growth and mangrove expansion (e.g. Keep River and Gilbert River estuaries), gradual long-term expansion of mangrove (Flinders River and McArthur River estuaries), and estuaries with areas of rapid recent die back of mangrove (Roper River and Flinders estuaries). This information is important for the management of key species as well decisions around coastal developments. With Landsat and new satellite data streams (e.g. Sentinal 2) continually being added to the DEA, this time-series analysis approach could be developed into an effective habitat extent and condition monitoring tool for northern Australia. The image products and analysis tools employed in this study demonstrate the potential utility of DEA for mapping the extent and dynamics of key coastal and estuarine habitats utilised by threatened and migratory species. To better inform the management of these species, a key next step in this approach is to utilise ground-validation data to enable these habitats to be robustly classified and quantified using the Landsat archive. This analysis should provide important baseline information and enable the extent and condition of key habitats to be monitored. Preferred Citation: Phillips, C., Lymburner, L. & Brooke, B. (2018). Characterising northern estuaries using Digital Earth Australia. Report to the National Environmental Science Programme, Marine Biodiversity Hub. Geoscience Australia.

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project B4 - "Underpinning the repair and conservation of Australia’s threatened coastal-marine habitats". For specific data outputs from this project, please see child records associated with this metadata. The primary objective of this project is to provide essential research to underpin restoration efforts to increase the success and efficiency of shellfish and saltmarsh repair. The secondary objective is to quantify clear easily understood benefits of repair to further increase groundswell, Indigenous and interest group support for repair efforts. For Phase 2 this involves: Shellfish reefs 1. Providing critical research to underpin the success of companion works investments into Sydney rock oyster (Saccostrea glomerata) restoration in Qld and NSW 2. Ongoing engagement with Indigenous groups, focused around especially SEQ and NSW to match the emphasis on Sydney rock oyster; 3. Through the Nature Conservancy, linking to shellfish restoration works in Port Phillip Bay (Vic), St Vincent’s Gulf (SA) and Oyster Harbour (WA) so that a National Business Case complete with examples of successes to date can be developed; 4. Underpinning this succinct business case with an information base for any follow-on activities such as assessment of shellfish reefs as an endangered community. Salt marshes 1. Estimating the benefits of salt marsh repair for an easily publicly understood indicator - prawn species. 2. Undertaking this work in NSW and Qld in parallel with proposed repair works so that very concrete case studies are available to demonstrate the benefits of repair. Planned Outputs Shellfish reef project outputs: • A scientific paper published in an eminent, peer-reviewed journal describing the ecology and biodiversity of shellfish reefs and biodiversity comparison against other marine habitats; • A scientific paper published in an eminent, peer-reviewed journal which identifies trajectories of change from past baselines to current condition and develops achievable targets for repair; • News stories, web articles, social media, brochures and oral presentations at national/international conferences, which communicate the key research findings to coastal stakeholders such as fishers, divers, NRM groups and government agencies; • News stories, web articles and social media which communicate the importance of shellfish reefs and shellfish food sources to Indigenous Australians; • Summary of community benefit and business propositions for coastal wetland repair expanding on the vision of a rejuvenated coastal ecology and written at the level required for input to various investors, agencies and public policy; • Updates at the end of 2016 as part of stakeholder engagement and continued communication. Salt marsh prawn productivity outputs: • A scientific paper published in an eminent, peer-reviewed journal quantifying and contrasting prawn productivity in healthy and degraded salt marsh communities in tropical and temperate environments; • Publicly accessible communication resources (brochures, social media, media releases and webpages) which articulate simply the prawn productivity values of salt marshes and links this to the need for the protection, conservation and restoration of degraded salt marsh communities.

Relevant spatial datasets for mapping pressures were identified and collated. Pressures were categorised as resource extraction and use, pollution, habitat modification, climate, and ‘other’. Pressures included Commonwealth trawl fisheries effort, aquaculture infrastructure, location of oil and gas infrastructure, historical shipping and pollution data, location of historical seismic operations, cyclone intensity, spoil dumping, sewage outfalls, location of ports, and tourism operations. Two main pressure maps were derived i) an additive pressure hotspots map, which gives higher weight to areas with multiple pressures of high risk; and, ii) a multiplicative hotspot pressure map, which gives lower weighting to areas with multiple low risk pressures. Areas of high risk were identified, and thus possibly high benefit for management versus low risk or low associated benefit for mitigation. The information generated needs to be considered alongside robust species distribution data and interaction matrices for effective decision-making.

The region of interest for this study was Australias North West Shelf, extending from the inter-tidal zone to the continental shelf break, with particular focus on data relevant to the area between North West Cape and Port Hedland. The principal resource used for identification of existing data and information was the bibliography assembled by Jernakoff et al. (2006). This document provides an overview of the relevance of existing information to the North West Shelf Marine Environmental Management Study (NWSMEMS). It identifies gaps in knowledge that are likely to be important to the NWSMEMS and makes recommendations for addressing these gaps. The review presents information on the marine environment, grouped into physical, chemical and biological themes. This summary at the beginning of the document presents our major conclusions about the relevance of existing knowledge and about major gaps in information, and our recommendations for future research.

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project A6 - "Prioritisation of research and management needs for Australian elasmobranch species". For specific data outputs from this project, please see child records associated with this metadata. NERP successfully demonstrated new ways to get the raw ingredients for evidence-based management of previously intractable species: abundance, survival, connectivity. But there is still a need to explore/demonstrate how management can use these tools (e.g. adaptive control of bycatch, or deciding if more monitoring is needed), and which species are suitable. This project comprises (i) a workshop to re-assess Australian shark and ray species in terms of degree-of-concern, state-of-knowledge-for-management, and feasibility-of-filling-knowledge-gaps; and (ii) a desk study exemplifying one pathway to management use. In 2016, we will work with DoE to prioritize species for research and explore more management pathways. Planned Outputs • A report outlining workshop findings, recommendations relative to data gaps and effective research approaches to address these gaps. • A paper demonstrating how management can use new methods to examine adaptive monitoring of bycatch to assess impact • Presentation of results to key stakeholders and end users