This dataset derives from deployments of pelagic baited camera systems (stereo-BRUVS) conducted within the Oceanic Shoals Commonwealth Marine Reserve (CMR) in the Timor Sea during September and October 2012 onboard the RV Solander. This resource comprises species lists and relative abundance data (measured as MaxN, the maximum number of individuals of a given species captured in any one frame) for 116 sampling sites surveyed across three focal areas. The Oceanic Shoals Commonwealth Marine Reserve survey was undertaken as an activity within the Australian Government's National Environmental Research Program Marine Biodiversity Hub and was the key component of Research Theme 4 - Regional Biodiversity Discovery to Support Marine Bioregional Plans. Hub partners involved in the survey included the Australian Institute of Marine Science, Geoscience Australia, the University of Western Australia, Museum Victoria and the Museum and Art Gallery of the Northern Territory. Data acquired during the survey included: multibeam sonar bathymetry and acoustic backscatter; sub-bottom acoustic profiles; physical samples of seabed sediments, infauna and epibenthic biota; towed underwater video and still camera observations of seabed habitats; baited video observations of demersal and pelagic fish, and; oceanographic measurements of the water column from CTD (conductivity, temperature, depth) casts and from deployment of sea surface drifters. Further information on the survey is available in the post-survey report published as Geoscience Australia Record 2013/38: Nichol, S.L., Howard, F.J.F., Kool, J., Stowar, M., Bouchet, P., Radke, L.,Siwabessy, J., Przeslawski, R., Picard, K., Alvarez de Glasby, B., Colquhoun, J., Letessier, T. & Heyward, A. 2013. Oceanic Shoals Commonwealth Marine Reserve (Timor Sea) Biodiversity Survey: GA0339/SOL5650 - Post Survey Report. Record 2013/38. Geoscience Australia: Canberra. (GEOCAT #76658).

The data is a collection of reef habitat structure measurements from sites around Tasmania with regional snapshots from Jurien Bay (WA) and Jervis Bay (NSW). Explanatory variables investigated were depth, duration of protection from fishing within marine protected area, rugosity, boulder substratum at a site, the average number of refuge size categories, and a fractal refuge index that reflected the frequency distribution of different sized physical refuges. Also considered were biogenic habitat structure in the form of the percent cover of canopy algae and the biomass of predatory fish.

Towed-diver surveys (aka. Towboard surveys) are conducted by the Coral Reef Ecosystem Division (CRED) of the NOAA Pacific Islands Fisheries Science Center (PIFSC) as part of biennial Pacific Reef Assessment and Monitoring Program (RAMP) Cruises. These cruises support NOAA Coral Reef Conservation Program (CRCP) long-term goals for sustainable management and conservation of coral reef ecosystems. 4 towboard surveys (4.952 km in length), were conducted at Stingray Shoals in the Marianas Archipelago from 19 August - 30 September 2003 as part of RAMP Cruise OES0307. Towboard surveys are a good method for obtaining a general description of large reef areas, assessing the status of low-density populations of large-bodied reef fish, large-scale disturbances (e.g., bleaching), general distribution and abundance patterns of macro-invertebrates (e.g., COT, giant clams), and for assessing trends in these populations and metrics. A pair of scuba divers (1 fish and 1 benthic diver) are towed 60 m behind a small survey launch at a speed of 1-2 knots and a depth of approximately 15m. Each survey is 50 min long, covers about 2 km of habitat, and is divided into ten 5-minute survey segments. The fish diver records, to the lowest possible taxon, all large-bodied reef fishes (>50cmTL) seen within 5m either side and 10m in front of the towboard. Length of each individual is estimated to the nearest cm. The fish towboard is also outfitted with a forward-facing digital video camera to record the survey swath. The benthic diver records percent cover of coral and macroalgae, estimates benthic habitat type and complexity, and censuses a suite of benthic macroinvertebrates including Crown of Thorns sea stars and sea urchins. The benthic towboard is equipped with a downward-facing digital still camera which images the benthos at 15 second intervals. These images are analyzed for percent cover of coral, algae, and other benthic components. Both towboards are equipped with SEABIRD SBE-39 temperature/depth sensors set to record at 5 second intervals. Latitude and longitude of each survey track is recorded at 15 second intervals using a Global Positioning System (GPS) receiver onboard the tow boat. A layback algorithm is applied to more accurately map the position of the divers with respect to the reef environment. This algorithm calculates the position of the divers based on the position of the tow boat taking into account the length of the tow rope, the depth of the divers, and the curvature of the survey track. This metadata applies to the fish biomass observations.

Towed Video transects + Digital StillsStereo BRUVSMultibeamCTD This biological survey will provide targeted benthic habitat and fish biodiversity information for six key areas associated with a) potential pipeline routes b) potential sensitive receptor habitats outside the Oceanic Shoals Commonwealth Marine Protected Area c) potential sensitive receptor habitats within the Oceanic Shoals Commonwealth Marine Protected Area. The biological survey will use standardised methods so that data collected can be referenced to, and compared with, other survey data collected on this shelf by AIMS, ConocoPhillips and Geoscience Australia.

This part of DS 781 presents data for the map showing the predicted distribution of cup corals in the Santa Barbara Channel, California, region. The raster data file is included in "CupCorals_SantaBarbaraChannel.zip," which is accessible from https://pubs.usgs.gov/ds/781/SantaBarbaraChannel/data_catalog_SantaBarbaraChannel.html. Presence-absence data of benthic macro-invertebrates and associated habitat (that is, sediment type and depth) were collected using a towed camera sled in selected areas along the coast off southern California during a ground-truth observation cruise conducted by the U.S. Geological Survey and NOAA National Marine Fisheries Service for the California Seafloor Mapping Program. Benthic community structure was determined from 35 video towed-camera transects within California's State Waters 3-nautical-mile limit in the Santa Barbara Channel. These transects produced a total of 923 10-second observations from the Offshore of Refugio Beach map area (34.5 degrees N., 120.1 degrees W.) to the Hueneme Canyon and vicinity map area (34.1 degrees N., 119.2 degrees W.). Presence-absence data were collected for 29 benthic, structure-forming nonmobile taxa. Using this information, generalized linear models (GLMs) were developed to predict the probability of occurrence of five commonly observed taxa (cup corals, hydroids, short and tall sea pens, and brittle stars in the sediment) in five map areas within the Santa Barbara Channel (SBC). A sixth map area (Offshore of Carpinteria) was not modeled owing to insufficient data. The analysis demonstrates that the community structure for the five map areas can be divided into three statistically distinct groups: (1) the Hueneme Canyon and vicinity and the Offshore of Ventura map areas; (2) the Offshore of Santa Barbara and the Offshore of Coal Oil Point map areas; and (3) the Offshore of Refugio Beach map area. These three distinct groups are the main reason that the probability for each taxa can be so dramatically different within one predictive-distribution map area. The five most frequently observed benthic macro-invertebrate taxa were selected for these predictive-distribution grids. Presence-absence data for each selected invertebrate were fit to specific generalized linear models using geographic location, depth, and seafloor character as covariates. Data for the covariates were informed by the bathymetry, seafloor character, and other ground-truth data from the different map areas of the Santa Barbara Channel region that are part of the California State Waters Map Series DS 781. Observations based on depth were limited by the capability of the towed camera sled; as a result, no predictions were made below depths of 150 m (in other words, on the continental slope or in Hueneme Canyon). Cup corals and hydroids had high predicted probabilities of occurrence in areas of hard substrata, whereas short and tall sea pens were predicted to occur in parts of the SBC that had unconsolidated and mixed sediment. Our model predicted that brittle stars would occur throughout the entire SBC on various bottom types.

This part of DS 781 presents data for the map showing the predicted distribution of cup corals in the Santa Barbara Channel, California, region. The raster data file is included in "CupCorals_SantaBarbaraChannel.zip," which is accessible from https://pubs.usgs.gov/ds/781/SantaBarbaraChannel/data_catalog_SantaBarbaraChannel.html. Presence-absence data of benthic macro-invertebrates and associated habitat (that is, sediment type and depth) were collected using a towed camera sled in selected areas along the coast off southern California during a ground-truth observation cruise conducted by the U.S. Geological Survey and NOAA National Marine Fisheries Service for the California Seafloor Mapping Program. Benthic community structure was determined from 35 video towed-camera transects within California's State Waters 3-nautical-mile limit in the Santa Barbara Channel. These transects produced a total of 923 10-second observations from the Offshore of Refugio Beach map area (34.5 degrees N., 120.1 degrees W.) to the Hueneme Canyon and vicinity map area (34.1 degrees N., 119.2 degrees W.). Presence-absence data were collected for 29 benthic, structure-forming nonmobile taxa. Using this information, generalized linear models (GLMs) were developed to predict the probability of occurrence of five commonly observed taxa (cup corals, hydroids, short and tall sea pens, and brittle stars in the sediment) in five map areas within the Santa Barbara Channel (SBC). A sixth map area (Offshore of Carpinteria) was not modeled owing to insufficient data. The analysis demonstrates that the community structure for the five map areas can be divided into three statistically distinct groups: (1) the Hueneme Canyon and vicinity and the Offshore of Ventura map areas; (2) the Offshore of Santa Barbara and the Offshore of Coal Oil Point map areas; and (3) the Offshore of Refugio Beach map area. These three distinct groups are the main reason that the probability for each taxa can be so dramatically different within one predictive-distribution map area. The five most frequently observed benthic macro-invertebrate taxa were selected for these predictive-distribution grids. Presence-absence data for each selected invertebrate were fit to specific generalized linear models using geographic location, depth, and seafloor character as covariates. Data for the covariates were informed by the bathymetry, seafloor character, and other ground-truth data from the different map areas of the Santa Barbara Channel region that are part of the California State Waters Map Series DS 781. Observations based on depth were limited by the capability of the towed camera sled; as a result, no predictions were made below depths of 150 m (in other words, on the continental slope or in Hueneme Canyon). Cup corals and hydroids had high predicted probabilities of occurrence in areas of hard substrata, whereas short and tall sea pens were predicted to occur in parts of the SBC that had unconsolidated and mixed sediment. Our model predicted that brittle stars would occur throughout the entire SBC on various bottom types.

This record is derived from DEC Marine Policy Branch Endnote library and spatially referenced SIER Database.

The data is quantitative abundance of fish and megafaunal invertebrates and algal % cover derived from transect based counts at a wide range of locations across Temperate Australia. The methods are described in detail in Edgar and Barrett (1997). Primarily the data are derived from transects at 5 m depth and/or 10 m depth at each site surveyed. Methods were initially developed for research on temporal changes following protection in Tasmanian MPAs (Maria Is, Tinderbox, Ninepin Point, Governor Island). The data represented by this record was collected in MPA studies and surveys interstate, and was collected from Port Phillip Heads (VIC). In many cases the dataset involved temporal replication (year scale).

The data is quantitative abundance of fish and megafaunal invertebrates and algal % cover derived from transect based counts at a wide range of locations across Temperate Australia. The methods are described in detail in Edgar and Barrett (1997). Primarily the data are derived from transects at 5 m depth and/or 10 m depth at each site surveyed. Methods were initially developed for research on temporal changes following protection in Tasmanian MPAs (Maria Is, Tinderbox, Ninepin Point, Governor Island). Further research has collected data in Tasmania, in MPA planning surveys (e.g. St Helens, Waterhouse Region, Low Head, Lillico Beach, Rocky Cape), an oil spill assessment (Low Head), and in studies and surveys in new Tasmania MPAs (Port Davey and the Kent Group). The data represented by this record was collected in MPA planning surveys and for opportunistic surveys such as the Low Head oil spill assessment. In many cases the dataset involved temporal replication (year scale).