Mean 2014 to 2023 pelagic fish total biomass in the Estuary and Gulf of St.Lawrence obtained by summing the fish biomass (kg) for all species for a tow and then averaging tows in each grid cell 10 km x 10 km. Input data are from the annual August (north) and September (south) multidisciplinary surveys. A distinct layer by survey is presented because the total biomasses are not comparable from one survey to the other (different fishing gears for each one). Purpose Since 1990, the Department of Fisheries and Oceans has been conducting an annual multidisciplinary survey in the Estuary and northern Gulf of St. Lawrence using a standardized protocol. In the southern Gulf of St. Lawrence, these bottom trawl surveys has been carrying out each September since 1971. These missions are an important source of information about the status of the marine ressources. The objectives of the surveys are multiple: to estimate the abundance and biomass of groundfish and invertebrates, to identify the spatial distribution and biological characteristics of these species, to monitor the biodiversity of the Estuary and Gulf and finally, to describe the environmental conditions observed in the area at the moment of the sampling. The southern Gulf surveys are realized using the following standardized protocol: Hurlbut,T. and D.Clay (eds) 1990. Protocols for Research Vessel Cruises within the Gulf Region (Demersal Fish) (1970-1987). Can. MS Rep. Fish. Aquat. Sci. No. 2082: 143p. The sampling protocols used for the Estuary and northern Gulf surveys are described in details in the following publications: Bourdages, H., Archambault, D., Bernier, B., Fréchet, A., Gauthier, J., Grégoire, F., Lambert, J., et Savard, L. 2010. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2009 dans le nord du golfe du Saint-Laurent. Rapp. stat. can. sci. halieut. aquat. 1226 : xii+ 72 p. Bourdages, H., Archambault, D., Morin, B., Fréchet, A., Savard, L., Grégoire, F., et Bérubé, M. 2003. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2003 dans le nord du golfe du Saint-Laurent. Secr. can. consult. sci. du MPO. Doc. rech. 2003/078. vi + 68 p. Annual reports are available at the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm). Bourdages, H., Brassard, C., Desgagnés, M., Galbraith, P., Gauthier, J., Légaré, B., Nozères, C. and Parent, E. 2017. Preliminary results from the groundfish and shrimp multidisciplinary survey in August 2016 in the Estuary and northern Gulf of St. Lawrence. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/002. v + 87 p.

2014 to 2023 demersal fish abundance in the Estuary and the Gulf of St. Lawrence. The abundance is expressed as a number of individuals per normalized trawl set. Each species is individually represented in the northern Gulf and in the southern Gulf. Input data are from the annual August (North) and September (South) multidisciplinary surveys. The demersal species represented are: Alewife, Alligatorfish, American Plaice, Arctic Alligatorfish, Arctic Hookear Sculpin, Arctic Shanny, Arctic Staghorn Sculpin, Atlantic Cod, Atlantic Eelpout, Atlantic Halibut, Atlantic Hookear Sculpin, Atlantic Poacher, Atlantic Spiny Lumpsucker, Atlantic Wolffish, Black Dogfish, Blacksnout Seasnail, Brill/Windowpane, Common Grenadier, Common Wolf Eel, Cunner, Daubed Shanny, Esmark's Eelpout, Fish Doctor, Fourbeard Rockling, Fourline Snakeblenny, Greenland Cod, Greenland Halibut, Haddock, Longfin Hake, Longhorn Sculpin, Lowfin Snailfish, Monkfish, Goosefish, Moustache Sculpin, Newfoundland Eelpout, Northern Hagfish, Ocean Pout, Rockfishes, Sea Sculpin, Sea Tadpole, Shorthorn Sculpin, Smooth Skate, Snakeblenny, Spatulate Sculpin, Spiny Dogfish, Spinytail Skate, Spotted Wolffish, Stout Eelblenny, Thorny Skate, Twohorn Sculpin, Vahl's Eelpout, Variegated Snailfish, White Hake, Winter Flounder, Winter Skate, Witch Flounder, Wolf Eelpout, Wrymouth and Yellowtail Flounder. Purpose Since 1990, the Department of Fisheries and Oceans has been conducting an annual multidisciplinary survey in the Estuary and northern Gulf of St. Lawrence using a standardized protocol. In the southern Gulf of St. Lawrence, these bottom trawl surveys has been carrying out each September since 1971. These missions are an important source of information about the status of the marine ressources. The objectives of the surveys are multiple: to estimate the abundance and biomass of groundfish and invertebrates, to identify the spatial distribution and biological characteristics of these species, to monitor the biodiversity of the Estuary and Gulf and finally, to describe the environmental conditions observed in the area at the moment of the sampling. The southern Gulf surveys are realized using the following standardized protocol: Hurlbut,T. and D.Clay (eds) 1990. Protocols for Research Vessel Cruises within the Gulf Region (Demersal Fish) (1970-1987). Can. MS Rep. Fish. Aquat. Sci. No. 2082: 143p. The sampling protocols used for the Estuary and northern Gulf surveys are described in details in the following publications: Bourdages, H., Archambault, D., Bernier, B., Fréchet, A., Gauthier, J., Grégoire, F., Lambert, J., et Savard, L. 2010. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2009 dans le nord du golfe du Saint-Laurent. Rapp. stat. can. sci. halieut. aquat. 1226 : xii+ 72 p. Bourdages, H., Archambault, D., Morin, B., Fréchet, A., Savard, L., Grégoire, F., et Bérubé, M. 2003. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2003 dans le nord du golfe du Saint-Laurent. Secr. can. consult. sci. du MPO. Doc. rech. 2003/078. vi + 68 p. Annual reports are available at the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm). Bourdages, H., Brassard, C., Desgagnés, M., Galbraith, P., Gauthier, J., Légaré, B., Nozères, C. and Parent, E. 2017. Preliminary results from the groundfish and shrimp multidisciplinary survey in August 2016 in the Estuary and northern Gulf of St. Lawrence. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/002. v + 87 p.

2014 to 2023 demersal fish group richness in the Estuary and Gulf of St.Lawrence estimated by the number of species found in each grid cell 10 km x 10 km. Input data are from the annual August and September multidisciplinary surveys. Purpose Since 1990, the Department of Fisheries and Oceans has been conducting an annual multidisciplinary survey in the Estuary and northern Gulf of St. Lawrence using a standardized protocol. In the southern Gulf of St. Lawrence, these bottom trawl surveys has been carrying out each September since 1971. These missions are an important source of information about the status of the marine ressources. The objectives of the surveys are multiple: to estimate the abundance and biomass of groundfish and invertebrates, to identify the spatial distribution and biological characteristics of these species, to monitor the biodiversity of the Estuary and Gulf and finally, to describe the environmental conditions observed in the area at the moment of the sampling. The southern Gulf surveys are realized using the following standardized protocol: Hurlbut,T. and D.Clay (eds) 1990. Protocols for Research Vessel Cruises within the Gulf Region (Demersal Fish) (1970-1987). Can. MS Rep. Fish. Aquat. Sci. No. 2082: 143p. The sampling protocols used for the Estuary and northern Gulf surveys are described in details in the following publications: Bourdages, H., Archambault, D., Bernier, B., Fréchet, A., Gauthier, J., Grégoire, F., Lambert, J., et Savard, L. 2010. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2009 dans le nord du golfe du Saint-Laurent. Rapp. stat. can. sci. halieut. aquat. 1226 : xii+ 72 p. Bourdages, H., Archambault, D., Morin, B., Fréchet, A., Savard, L., Grégoire, F., et Bérubé, M. 2003. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2003 dans le nord du golfe du Saint-Laurent. Secr. can. consult. sci. du MPO. Doc. rech. 2003/078. vi + 68 p. Annual reports are available at the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm). Bourdages, H., Brassard, C., Desgagnés, M., Galbraith, P., Gauthier, J., Légaré, B., Nozères, C. and Parent, E. 2017. Preliminary results from the groundfish and shrimp multidisciplinary survey in August 2016 in the Estuary and northern Gulf of St. Lawrence. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/002. v + 87 p.

PURPOSE: These data have been updated following a Canadian Science Advice Secretariat (CSAS) Regional Science Advisory Process. Associated publications are available in the citation section below or will be posted on the Fisheries and Oceans Canada (DFO) Science Advisory Schedule as they become available. Determine the stock status of southern Gulf of St. Lawrence Atlantic Cod. DESCRIPTION: The yearly spawning stock biomass estimates of southern Gulf of St. Lawrence Atlantic Cod were obtained using a Statistical Catch-at-Age model as part of the stock assessment to year 2023. The yearly estimates presented come from Markov Chain Monte Carlo (MCMC) simulations. The yearly median estimates are provided, along with uncertainty estimates (2.5th, 25th, 75th and 97.5th percentiles). The values are in thousands of tons of spawning stock biomass. USE LIMITATION: To ensure scientific integrity and appropriate use of the data, we would encourage you to contact the data custodian.

2014 to 2023 pelagic fish abundance in the Estuary and the Gulf of St. Lawrence. The abundance is expressed as a number of individuals per normalized trawl set. Each species is individually represented in the northern Gulf and in the southern Gulf. Input data are from the annual August (North) and September (South) multidisciplinary surveys. The pelagic species represented are: Arctic Cod, Atlantic Argentine, Atlantic Herring, Atlantic Mackerel, Atlantic Soft Pout, Capelin, Lumpfish, Pollock, Rainbow Smelt, Sand Lances, Silver Hake, Threespine Stickleback and White Barracudina. Purpose Since 1990, the Department of Fisheries and Oceans has been conducting an annual multidisciplinary survey in the Estuary and northern Gulf of St. Lawrence using a standardized protocol. In the southern Gulf of St. Lawrence, these bottom trawl surveys has been carrying out each September since 1971. These missions are an important source of information about the status of the marine ressources. The objectives of the surveys are multiple: to estimate the abundance and biomass of groundfish and invertebrates, to identify the spatial distribution and biological characteristics of these species, to monitor the biodiversity of the Estuary and Gulf and finally, to describe the environmental conditions observed in the area at the moment of the sampling. The southern Gulf surveys are realized using the following standardized protocol: Hurlbut,T. and D.Clay (eds) 1990. Protocols for Research Vessel Cruises within the Gulf Region (Demersal Fish) (1970-1987). Can. MS Rep. Fish. Aquat. Sci. No. 2082: 143p. The sampling protocols used for the Estuary and northern Gulf surveys are described in details in the following publications: Bourdages, H., Archambault, D., Bernier, B., Fréchet, A., Gauthier, J., Grégoire, F., Lambert, J., et Savard, L. 2010. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2009 dans le nord du golfe du Saint-Laurent. Rapp. stat. can. sci. halieut. aquat. 1226 : xii+ 72 p. Bourdages, H., Archambault, D., Morin, B., Fréchet, A., Savard, L., Grégoire, F., et Bérubé, M. 2003. Résultats préliminaires du relevé multidisciplinaire de poissons de fond et de crevette d’août 2003 dans le nord du golfe du Saint-Laurent. Secr. can. consult. sci. du MPO. Doc. rech. 2003/078. vi + 68 p. Annual reports are available at the Canadian Science Advisory Secretariat (CSAS), (http://www.dfo-mpo.gc.ca/csas-sccs/index-eng.htm). Bourdages, H., Brassard, C., Desgagnés, M., Galbraith, P., Gauthier, J., Légaré, B., Nozères, C. and Parent, E. 2017. Preliminary results from the groundfish and shrimp multidisciplinary survey in August 2016 in the Estuary and northern Gulf of St. Lawrence. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/002. v + 87 p.

These data represent density per square meter calculated from counts of fin fish made by divers on fixed transects on permanent subtidal monitoring sites around San Nicolas Island between 1981 and 2019. Fish were counted on seven sites, each of which had five midwater and five benthic fish transects. Six of the sites were first sampled in 1980, one additional was added in 1987. The sites have usually been monitored twice per year, most often in October and April. The midwater and bottom portions of each transect were sampled separately. Midwater transects were 50 m long by 5 m wide and encompassed the entire water column except the bottom 2 m (250 square meters). Bottom transects were 50 m long by 2 m wide and included only the bottom 2 m of the water column (100 square meters). The list of species counted was expanded over time as new species were encountered and the data here include all 66 species counted.

This dataset includes the model output results published in Cooley et al. (2015), which described an integrated assessment model (IAM) that numerically simulates oceanographic, population dynamic, and socioeconomic relationships for the U.S. commercial sea scallop fishery. Ocean acidification, the progressive change in ocean chemistry caused by uptake of atmospheric CO2, is likely to affect some marine resources negatively, including shellfish. The Atlantic sea scallop (Placopecten magellanicus) supports one of the most economically important single-species commercial fisheries in the United States. Careful management appears to be the most powerful short-term factor affecting scallop populations, but in the coming decades scallops will be increasingly influenced by global environmental changes such as ocean warming and ocean acidification. This analysis drew heavily on publicly available datasets of which some is reported in Cooley at al. (2015). We did not include the publicly available data in this dataset.

A modeling and analysis tool, “artemis,” was developed to analyze quantitative Polymerase Chain Reaction data from environmental DNA studies. Artemis models were fit to data from two field experiments in a tidal environment (Shag Slough, San Francisco Bay-Delta, CA): Experiment 1) 54 live Delta Smelt were placed in a live pen and Experiment 2) 25 Delta Smelt and 15 steelhead were placed in a live pen. Water samples were taken prior to live pen deployment in both experiments, providing control samples that represented zero target fish in Shag Slough (this was confirmed by no detections of Delta Smelt or steelhead DNA in the control samples). The ln[eDNA] declined with distance of the sampling point from the live pen. Furthermore, DNA concentration in samples increased with increasing Delta Smelt-biomass level. The tool developed in this project, artemis, is effective for designing an eDNA study and analyzing the results: once a site has been characterized, artemis can be used to select the number of samples to be taken and the distribution of those samples through time to achieve a desired probability of DNA detection

This map displays fish biomass observation locations overlaid on bathymetry.