This dataset contains data from a multi-faceted analysis of the sensitivity of Pacific cod larvae to elevated carbon dioxide (CO2) levels based on laboratory experiment studies. Fish behavior in a horizontal light gradient was used to evaluate the sensitivity of behavioral phototaxis in 4–5 week old cod larvae. Fish at elevated CO2 levels (~1500 and 2250 μatm) exhibited a stronger phototaxis (moved more quickly to regions of higher light levels) than fish at ambient CO2 levels (~600μatm). In an independent experiment, we examined the effects of elevated CO2 levels on growth of larval Pacific cod over the first 5 weeks of life under two different feeding treatments. Fish exposed to elevated CO2 levels (~1700μatm) were smaller and had lower lipid levels at 2 weeks of age than fish at low (ambient) CO2 levels (~500μatm). However, by 5 weeks of age, this effect had reversed: fish reared at elevated CO2 levels were slightly (but not significantly) larger and had higher total lipid levels and storage lipids than fish reared at low CO2. Fatty acid composition differed significantly between fish reared at high and low CO2 levels (p less than 0.01) after 2 weeks of feeding, but this effect diminished by week 5. Effects of CO2 on FA composition of the larvae differed between the two diets, an effect possibly related more to dietary equilibrium and differential lipid class storage than a fundamental effect of CO2 on fatty acid metabolism. These experiments point to a stage-specific sensitivity of Pacific cod to the effects of OA. Further understanding of these effects will be required to predict the impacts on production of Pacific cod fisheries.

This dataset contains the biological response for Atlantic sea scallops (Placopecten magellanicus) exposed to three different levels of carbon dioxide enrichment (low, medium, high). The experiment took place from October 23, 2019 to December 19, 2019 (8 weeks). Salinity, temperature, dissolved oxygen, dissolved inorganic carbon, pH, chlorophyll-a, and seston counts are reported for the seawater during the 8 week exposure. Physiological measurements (feeding, respiration, and excretion rates) were taken 4 times during the experiment at the following temperatures (13.1C, 9.4C, 7.4C, and 6.1C). For feeding rates, the clearance rate, organic ingestion rate, assimilation rate, and assimilation efficiency are reported. From the respiration rate and excretion rate the atomic oxygen to nitrogen ratio is also reported. Scope for growth (the amount of energy available to grow) is calculated from the assimilated energy minus the energy for catabolic processes. Growth parameters were also taken during the 8 week experiment every 2 weeks. For growth parameters, dry tissue weight, dry shell weight, length, width, and thickness are reported.

This dataset contains a laboratory experiment study with the goal of understanding the effects of ocean acidification on the embryos and larvae of red king crab, Paralithodes camtschaticus. The effects of the decline in ocean pH, known as ocean acidification, on marine species are not well understood. To test the effects on embryos and larvae of red king crab, Paralithodes camtschaticus, ovigerous crab and their larvae were held in CO2-acidified (pH 7.7) and control (ambient; pH 8.0) seawater during development. Morphometrics, hatch duration, fecundity, survival, mineral content, and condition were measured. Acidified embryos had 4% larger eyes and 5% smaller yolks, while mean hatch duration was 33% longer and female fecundity was unaffected. Acidified embryos also resulted in 4% longer larvae while acidified larvae had lower survival. Calcium content of both larvae and female carapaces after molting increased by 5% and 19%, respectively. Although ocean acidification may increase larval size and calcium content, the implications of this are unclear and decreased survival is likely to harm red king crab populations.

This dataset contains laboratory experiment data that were collected to examine the effects of elevated levels of CO2 on the growth, survival, otolith (ear bone) condition and the skeleton of juvenile scup, Stenotomus chrysops, a species that supports both commercial and recreational fisheries. Increasing amounts of atmospheric carbon dioxide from human industrial activities are causing changes in global ocean carbon chemistry resulting in a reduction in pH, a process termed ocean acidification. Studies have demonstrated adverse effects on calcifying organisms, particularly some invertebrates, corals, sea urchins, pteropods, and coccolithophores. It is important to determine which species are sensitive to elevated levels of CO2 because of the potential impacts to ecosystems, marine resources, biodiversity, food webs, populations and effects on human communities and economies. There have been few studies examining the effects of ocean acidification on marine fish, particularly the juvenile stages of species that support important fisheries. These data demonstrated that elevated levels of pCO2 (>1300 micro-atm) had no statistically significant effect on growth, survival, or otolith condition after 8 weeks of rearing. There was a trend towards a greater gain in weight and length in scup exposed to the mid-level (1726 micro-atm) and the high level (2614 micro-atm) treatments of pCO2 when compared to the fish in the control (1205 micro-atm) treatments, but these differences were not statistically significant. X-ray analysis of the fish revealed a slightly higher incidence of hyper-ossification in the vertebrae of a few scup from the highest treatments compared to fish from the control treatments. The study's results show that juvenile scup are tolerant to increases in levels of environmental pCO2, possibly due to conditions this species encounters in their naturally variable environment.

This dataset contains laboratory experiment data that were collected to examine the effects of ocean acidification on the Atlantic surfclam, Spisula solidissima, a species worth $31 million in 2009. Ocean acidification has negatively impacted growth and survival of multiple bivalve species, but because each species and developmental stage can show different responses, these studies were designed to determine potential impacts of increased CO2 on the larvae of the commercially important surfclam. Additionally, the role of nutrition (i.e., phytoplankton concentration) was included in a portion of these experiments because food availability may be able to mitigate the stress of ocean acidification and because ocean acidification has the potential to impact marine phytoplankton communities. During the summer of 2011, three different experiments were conducted at Woods Hole Oceanographic Institution examining the effects of three different pCO2 concentrations on larval surf clams. Two short term experiments (~70h) examined the effect of food availability on early shell development (fed vs unfed). One long term experiment (~21d) was conducted to examine the effects of pCO2 on shell development and metamorphic success (all animals well fed). Carbonate data is reported from these preliminary short-term experiments, and survival and shell length data is reported, in addition to carbonate data, from the long-term experiment. During 2012, one 6 day experiment was conducted examining the role and potential interactive effects of high and low food availability (400 and 40,000 cells ml-1 Tiso) and differential CO2 concentrations (ambient, ~1200 ppm and ~2200ppm). From these experiments, carbonate data, shell length, mass and biochemical compositions are reported. In 2013, two additional experiments were conducted to confirm results obtained in 2012. Unfortunately we observed stunted larval growth, no feeding effect on growth, high mortalities and a general failure to thrive. Given this, we infer poor gamete quality may have been the cause, and have chosen not to interpret these data as results are suspect. Therefore, 2013 data are therefore not included in this data submission.

This dataset contains laboratory experimental data that were collected to examine the effects of elevated levels of carbon dioxide on the growth of Atlantic surfclam (Spisula solidissima), a species that supports both commercial and recreational fisheries in the Northeast United States. Three levels of carbon dioxide enrichment (low, medium, and high) were delivered to surfclams in a 12-week exposure experiment. All treatments were done in 3 replicates (A, B, C). Approximately every 2 to 3 weeks, 12 individuals were removed from each treatment and measurements of length, width, height, dry tissue, and dry shell were recorded. Length was measured across the longest part of the shell, parallel to the hinge. Width was the thickness of the shell, and height was measured form the hinge to the outer edge of the shell. Dry tissue and dry shell samples were dried at 60°C until constant weight was achieved (~5 days). DIC measurements of carbon dioxide enrichment were taken and analyzed on an Apollo SciTech, while pH was measured weekly with a spectrophotometer. Values reported for DIC, pH, temperature, and salinity are the mean of each treatment during the 12-week experiment. The data indicated that increased carbon dioxide affected growth, tissue mass, and shell weight for Atlantic surfclam.

This dataset contains laboratory experiment data that were collected to examine the effects of ocean acidification on hatch size and larval growth of walleye pollock (Theragra chalcogramma). Rising atmospheric concentrations of CO2 are predicted to decrease the pH of high-latitude oceans by 0.3-0.5 units by 2100. Because of their limited capacity for ion exchange, embryos and larvae of marine fishes are predicted to be more sensitive to elevated CO2 than juveniles and adults. Eggs and larvae of walleye pollock (Theragra chalcogramma) were incubated across a broad range of CO2 levels (280-2100 matm) to evaluate sensitivity in this critical resource species. Slightly elevated CO2 levels (450 matm) resulted in earlier hatching times, but differences among egg batches were greater than those observed across CO2 treatments. Egg batches differed significantly in size-at-hatch metrics, but we observed no consistent effect of CO2 level. In three independent experiments, walleye pollock were reared at ambient and elevated CO2 levels through the early larval stage (to 30 days post-hatch). Across trials, there were only minor effects of CO2 level on size and growth rate, but fish in the ambient treatments tended to be slightly smaller than fish reared at elevated CO2 levels. These results suggest that growth potential of early life stages of walleye pollock is resilient with respect to the direct physiological effects of ocean acidification.

This dataset contains the results of a laboratory experiment study to understand the effect of ocean acidification on eggs and larvae of northern rock sole, Lepidopsetta polyxystra. The Bering Sea and Gulf of Alaska support a number of commercially important flatfish fisheries. These high latitude ecosystems are predicted to be most immediately impacted by ongoing ocean acidification but the range of responses by commercial fishery species has yet to be fully explored. In this study we examined the growth responses of northern rock sole (Lepidopsetta polyxystra) eggs and larvae across a range of CO2 levels (ambient to 1500 uatm) to evaluate the potential sensitivity to ocean acidification. Laboratory-spawned eggs and larvae were reared at 8 degrees Celsius in a flow-through culture system in which CO2 levels were maintained via computer-controlled injection of CO2 into a seawater conditioning tank. Overall, we observed only minor effects of elevated CO2 level on sizes of northern rock sole larvae. Size at hatch differed among offspring from four different females, but there was no significant effect of CO2 level on egg survival or size at hatch. In three separate larval growth trials, there was little effect of CO2 level on growth rates through the first 28 days post-hatch (DPH). However, in the one trial extended to 60 DPH, fish reared at the highest CO2 level had lower condition factors after 28 DPH suggesting that larvae undergoing metamorphosis may be more sensitive to environmental hypercapnia than earlier pre-flexion stages. These results suggest that while early life stages of northern rock sole are less sensitive to ocean acidification than previously examined flatfishes, they may be more sensitive to elevated CO2 levels than a previously studied gadid with a similar geographic range.

Impacts of elevated carbon dioxide on marine ecosystems depend on physiological responses to consequential decreased pH and increased temperature. Responses to these environmental factors vary among species and life stages, and interactive effects can be significant. To study effects of decreased pH and increased temperature on juvenile red king crab (RKC, Paralithodes camtschaticus) we exposed individuals to three levels of temperature: 11 degrees Celsius (ambient), 13 degrees Celsius, and 14 degrees Celsius, crossed with three levels of pH: 8.0, 7.8 and 7.5, for a total of nine treatments. To better understand the effect of these environmental changes at the level of genome regulation, we analyzed total RNA of whole crabs using Illumina-based RNA-seq whole-transcriptome sequencing. We assembled a RKC transcriptome using Trinity, annotated the transcriptome using Trinotate, and estimated expression levels using bowtie2, samtools and eXpress. Differentially expressed genes were identified using EdgeR. Genes were clustered by expression patterns. Interactive effects were determined by comparing sets of differentially expressed genes using three statistical models to examine the effect of temperature, the effect of pH, and the interaction between temperature and pH in EdgeR. The largest set of differentially expressed genes encoded proteins involved in regulation of extracellular and cuticular structures, including chitin-binding and calcification related proteins.

This dataset contains the samples from the posterior distribution for the parameters that relate Pacific cod (Gadus macrocephalus) length-at-age 1.5 (L1.5) to sea surface temperature, and recruitment to sea surface temperature. Predictions of length-at-age 1.5 are obtained by multiplying the reference level for length-at-age 1.5 by the exponential of the L1.5 parameter in this dataset multiplied by a z-scored SST value. The predictions of recruitment are obtained by multiplying the mean recruitment by the exponential of a recruitment deviation and by the exponential of the recruitment parameter in this dataset multiplied by a z-scored SST value. The reference levels for L.15 and mean recruitment depend on model configuration and draw from the posterior.