The raw sequencing data for this study have been deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB40814 with the following BioSample numbers: SAMEA7465213 (sample DWDS A1), SAMEA7465214 (DWDS A2), SAMEA7465217 (DWDS B1), SAMEA7465218 (DWDS B2), SAMEA7465220 (DWDS C1), SAMEA7465221 (DWDS C2), SAMEA7465222 (DWDS D1), SAMEA7465223 (DWDS D2), SAMEA7465226 (DWDS E1), and SAMEA7465227 (DWDS E2). This dataset is associated with the following publication: Gomez-Alvarez, V., S. Siponen, A. Kauppinen, A. Hokajarvi , A. Tiwari, A. Sarekoski, I.T. Miettinen, E. Torvinen, and T. Pitkanen. A comparative analysis employing a gene- and genome-centric metagenomic approach reveals changes in composition, function, and activity in waterworks with different treatment processes and source water in Finland. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 229: 119495, (2023).

The raw sequencing data for this study have been deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB40814 with the following BioSample numbers: SAMEA7465213 (sample DWDS A1), SAMEA7465214 (DWDS A2), SAMEA7465217 (DWDS B1), SAMEA7465218 (DWDS B2), SAMEA7465220 (DWDS C1), SAMEA7465221 (DWDS C2), SAMEA7465222 (DWDS D1), SAMEA7465223 (DWDS D2), SAMEA7465226 (DWDS E1), and SAMEA7465227 (DWDS E2). This dataset is associated with the following publication: Gomez-Alvarez, V., S. Siponen, A. Kauppinen, A. Hokajarvi , A. Tiwari, A. Sarekoski, I.T. Miettinen, E. Torvinen, and T. Pitkanen. A comparative analysis employing a gene- and genome-centric metagenomic approach reveals changes in composition, function, and activity in waterworks with different treatment processes and source water in Finland. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 229: 119495, (2023).

A table (DP_SRA.xlsx) contains rows as sample and columns as entries representing the biosample accession number (NCBI), collection (date), library strategy, target (source), and sequencing (technology) for each individual sample. The zip file (Genome_Set01.zip) contain nine (9) fasta file (DP_bin_02.fasta, DP_bin_04.fasta, DP_bin_09.fasta, DP_bin_10.fasta, DP_bin_14.fasta, DP_bin_15.fasta, DP_bin_16a.fasta, DP_bin_20.fasta, DP_bin_23.fasta) with the contig sequences (i.e. binning) for each metagenome-assembled genomes (MAGs). These data are available from the NCBI Sequence Read Archive (SRA) under the BioProject (https://www.ncbi.nlm.nih.gov/bioproject) with accession number PRJNA646252 and the following BioSample numbers: SAMN15536103 to SAMN15536108. This dataset is associated with the following publication: Gomez-Alvarez, V., H. Liu, J. Pressman, and D. Wahman. Metagenomic Profile of Microbial Communities in a Drinking Water Storage Tank Sediment after Sequential Exposure to Monochloramine, Free Chlorine, and Monochloramine. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 1(5): 1283-1294, (2021).

A table (DP_SRA.xlsx) contains rows as sample and columns as entries representing the biosample accession number (NCBI), collection (date), library strategy, target (source), and sequencing (technology) for each individual sample. The zip file (Genome_Set01.zip) contain nine (9) fasta file (DP_bin_02.fasta, DP_bin_04.fasta, DP_bin_09.fasta, DP_bin_10.fasta, DP_bin_14.fasta, DP_bin_15.fasta, DP_bin_16a.fasta, DP_bin_20.fasta, DP_bin_23.fasta) with the contig sequences (i.e. binning) for each metagenome-assembled genomes (MAGs). These data are available from the NCBI Sequence Read Archive (SRA) under the BioProject (https://www.ncbi.nlm.nih.gov/bioproject) with accession number PRJNA646252 and the following BioSample numbers: SAMN15536103 to SAMN15536108. This dataset is associated with the following publication: Gomez-Alvarez, V., H. Liu, J. Pressman, and D. Wahman. Metagenomic Profile of Microbial Communities in a Drinking Water Storage Tank Sediment after Sequential Exposure to Monochloramine, Free Chlorine, and Monochloramine. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 1(5): 1283-1294, (2021).

The Whole Genome Shotgun project has been deposited in DDBJ/ENA/GenBank under the BioProject PRJNA487286 with the following accession numbers CP061840 (chromosome) and CP061841 (plasmid). The raw sequence reads have been submitted to the NCBI SRA under the accession numbers SRR13076822 and SRR13076823. This dataset is associated with the following publication: Gomez-Alvarez, V., L. Boczek, I. Raffenberg, and R. Revetta. Closed Genome and Plasmid Sequences of Legionella pneumophila AW-13-4, Isolated from a Hot Water Loop System of a Large Occupational Building. Microbiology Resource Announcements. American Society for Microbiology, Washington, DC, USA, 10(1): e01276-20, (2021).

The Whole Genome Shotgun project has been deposited in DDBJ/ENA/GenBank under the BioProject PRJNA487286 with the following accession numbers CP061840 (chromosome) and CP061841 (plasmid). The raw sequence reads have been submitted to the NCBI SRA under the accession numbers SRR13076822 and SRR13076823. This dataset is associated with the following publication: Gomez-Alvarez, V., L. Boczek, I. Raffenberg, and R. Revetta. Closed Genome and Plasmid Sequences of Legionella pneumophila AW-13-4, Isolated from a Hot Water Loop System of a Large Occupational Building. Microbiology Resource Announcements. American Society for Microbiology, Washington, DC, USA, 10(1): e01276-20, (2021).

FASTA files containing the sequence data and for Assembled contigs (FastA), Predicted genes (FastA), Predicted proteins (FastA), Gene prediction (GFF v2). This dataset is not publicly accessible because: These are sequences that have already been deposited in publicly available databases and therefore we can avoid replication. Also the data is quite large and there are numerous files associated with these entries, which are included in the links below. It can be accessed through the following means: Using the following web links https://www.ncbi.nlm.nih.gov/bioproject/PRJNA299404 https://trace.ncbi.nlm.nih.gov/Traces/sra/?study=SRP065069 http://enve-omics.ce.gatech.edu/data/showerheads. Format: The data represent genome sequencing and assembly of 180 different contigs. This dataset is associated with the following publication: Soto-Giron, M.J., L. Rodriguez, C. Luo , M. Elk, H. Ryu, J. Santodomingo , and K. Konstantinidis. Biofilms on Hospital Shower Hoses: Characterization and Implications for Nosocomial Infections. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. American Society for Microbiology, Washington, DC, USA, 82(9): 2872-2883, (2016).

These metadata contain links to the original sequences on GenBank. These data show the final OTU and metadata tables for each environmental sample collected. Additionally, we included OTU tables resulting from bioinformatic decontamination steps (using microDecon) in R.

These metadata contain links to the original sequences on GenBank. These data show the final OTU and metadata tables for each environmental sample collected. Additionally, we included OTU tables resulting from bioinformatic decontamination steps (using microDecon) in R.

PS_GenBank.fasta file contain the sequences of the bacterial 16S rRNA-encoding gene for each representative sequence. The sequence containing four hypervariable regions was amplified using the primer set Eub-8f and 787. PS_GenBank.xlsx file contains rows as sample and columns as entries representing the accession number (NCBI) deposited in GenBank for each representative sequence (i.e. unique sequences). PS_OTU.fasta file contain the sequences of the bacterial 16S rRNA-encoding gene for each Operational Taxonomic Unit (OTU). The sequence containing four hypervariable regions was amplified using the primer set Eub-8f and 787. This dataset is associated with the following publication: Revetta , R., V. Gomez-Alvarez, T. Gerke, J. Santodomingo , and N. Ashbolt. CHANGES IN BACTERIAL COMPOSITION OF BIOFILM IN A METROPOLITAN DRINKING WATER DISTRIBUTION SYSTEM. JOURNAL OF APPLIED MICROBIOLOGY. Blackwell Publishing, Malden, MA, USA, 121(1): 294-305, (2016).