데이터셋 상세
미국
Data from: Analysis of expressed sequence tags from a significant livestock pest, the stable fly (Stomoxys calcitrans), identifies transcripts with a putative role in chemosensation and sex determination.
,The stable fly, Stomoxys calcitrans L. (Diptera: Muscidae), is one of the most significant pests of livestock in the United States. The identification of targets for the development of novel control for this pest species, focusing on those molecules that play a role in successful feeding and reproduction, is critical to mitigating its impact on confined and rangeland livestock. This data set was obtained from pyrosequencing of stable fly immature and adult specimens, comprising genes expressed at these stages. Stable fly specimens were obtained from an in vitro colony that is maintained at the Knipling-Bushland U.S. Livestock Insects Research Laboratory (Kerrville, TX) at 27°C, 60% RH, and a photoperiod of 12:12 [L:D] h. The stages included 1 g each of newly laid (t0) and 24 h post-oviposition (t24) embryos, 5 g of pooled 2nd–3rd instar larvae (late larvae), 2.5 g newly pupariated pupae (early pupae), 5 g pharate adults (pupae 2 d prior to eclosion; late pupae), and 1.5 g each of heads from unfed adult females and males (adult). Total RNA was isolated from various stages using the ToTALLY RNA Isolation Kit (Ambion, Foster City, CA) following the manufacturer’s protocol. Five micrograms of normalized cDNA was prepared for sequencing on the 454/ Roche GS-FLX. Double-stranded cDNA was nebulized to generate nominal 500-kb fragments and a shotgun library prepared for GS-FLX sequencing as per the manufacturer’s instructions (Roche, Indianapolis, IN). The sequencing library was run on a full picotitre plate and resulting data submitted to NCBI Short Read Archive (SRX018014). The resulting sequence data was assembled using newbler (RocheN) and the assembly optimized using a beta version of NGEN (DNAstar, Madison, WI) and Seqman (DNAstar, Oxford, UK). BLASTx was utilized based upon W.ND-BLAST (Dowd et al., 2005) against an embl-derived database for Drosophila (2008). Functional annotations were derived using DAVID (Dennis et al., 2003).,Raw reads were submitted to the Sequence Read Archive (SRA) Database at NCBI.,
데이터 정보
연관 데이터
Data from: The assembled transcriptome of the adult horn fly, Haematobia irritans
공공데이터포털
,The horn fly, Haematobia irritans irritans (Linnaeus, 1758; Diptera: Muscidae), a hematophagous external parasite of cattle, causes considerable economic losses to the livestock industry worldwide. This pest is mainly controlled with insecticides; however, horn fly populations from several countries have developed resistance to many of the products available for their control. In an attempt to better understand the adult horn fly and the development of resistance in natural populations, we used an Illumina paired-end read HiSeq and GAII approach to determine the transcriptomes of untreated control adult females, untreated control adult males, permethrin-treated surviving adult males and permethrin + piperonyl butoxide-treated killed adult males from a Louisiana population of horn flies with a moderate level of pyrethroid resistance. A total of 128,769,829, 127,276,458, 67,653,920, and 64,270,124 quality-filtered Illumina reads were obtained for untreated control adult females, untreated control adult males, permethrin-treated surviving adult males and permethrin + piperonyl butoxide-treated killed adult males, respectively. The de novo assemblies using CLC Genomics Workbench 8.0.1 yielded 15,699, 11,961, 2672, 7278 contigs (≥ 200 nt) for untreated control adult females, untreated control adult males, permethrin-treated surviving adult males and permethrin + piperonyl butoxide-treated killed adult males, respectively. More than 56% of the assembled contigs of each data set had significant hits in the BlastX (UniProtKB/Swiss-Prot database) (E <0.001). The number of contigs in each data set with InterProScan, GO mapping, Enzyme codes and KEGG pathway annotations were: Untreated Control Adult Females – 10,331, 8770, 2963, 2183; Untreated control adult males – 8392, 7056, 2449, 1765; Permethrin-treated surviving adult males – 1992, 1609, 641, 495; Permethrin + PBO-treated killed adult males – 5561, 4463, 1628, 1211.,Data is with this article and also available at the National Center for Biotechnology Information (NCBI) Short Read Archive (SRA) through the direct link https://www.ncbi.nlm.nih.gov/sra/SRP131897 or through SRA accession number SRP131897. The adult horn fly transcriptome Shotgun Assembly project has been deposited at DDBJ/EMBL/GenBank under the accession GGLM00000000. The version described in this paper is the first version, GGLM01000000. The overall BioProject ID is PRJNA429442 and the BioSample accessions are SAMN08355023, SAMN08355024, SAMN08355025, and SAMN08355026.,,
Data from: Characterization of Adult Transcriptomes from the Omnivorous Lady Beetle Coleomegilla maculata Fed Pollen or Insect Egg Diet
공공데이터포털
,Expressed genes from two individual sibling specimens of Coleomegilla maculata (Coleoptera: Coccinellidae). One individual was fed only insect eggs as an adult, and one was fed only pollen as an adult. Two sequenced samples, total RNA from a single individual adult specimen of Coleomegilla maculata, a beneficial lady beetle common in agroecosystems and native to North America. One sample was an adult fed only insect eggs (carnivore diet) and one sample was an adult fed only pollen (plant-based diet); insects were reared from the same egg mass (siblings), fed identical diet while in larval stage.,BioProject: Coleomegilla maculata strain:inbred Mississippi Transcriptome or Gene expression Taxonomy: Coleomegilla maculata Project data type: Transcriptome or Gene expression Scope: Multiisolate US Department of Agriculture Accession: PRJNA236444 ID: 236444,,
Data from: Long-lasting insecticide treated netting affects reproductive output and mating behavior in Tribolium castaneum (Coleoptera: Tenebrionidae) and Trogoderma variabile (Coleoptera: Dermestidae)
공공데이터포털
,Reproductive output and behavioral data from stored-product pest insects exposed to long-lasting insecticide treated netting. Includes offspring output and survival for Trogoderma variabile (treated as larvae) and Tribolium castaneum (treated as adults).,,
Data from: Point Protection with Transfluthrin against Musca domestica L. in a Semi-Field Enclosure
공공데이터포털
,,
Data from: Field Estimates of Attraction of Ceratitis capitata to Trimedlure and Bactrocera dorsalis (Diptera: Tephritidae) to Methyl Eugenol in Varying Environments
공공데이터포털
,This package includes the data from field experiments to measure the range of attraction of two "male lures" on two different pest fruit fly species via Mark-Release-Recapture (MRR). These values will be of importance to those seeking to optimize fruit fly detection networks or other networks of traps. Methyl eugenol is found to be more attractive to Bactrocera dorsalis compared with trimedlure to Ceratitis capitata. Data consists of number released, proportion responsive, quality control assay results, and recaptures in traps set in a grid pattern after the release.,Resources in this dataset:,,
Data from: Mosquito mutations F290V and F331W expressed in acetylcholinesterase of the sand fly Phlebotomus papatasi (Scopoli): Biochemical properties and inhibitor sensitivity
공공데이터포털
,Background: The Old-World sand fly, Phlebotomus papatasi (Scopoli), a vector of zoonotic cutaneous leishmaniasis, is usually controlled by insecticides, including anticholinesterases. Previous studies revealed 85% amino acid sequence identity of recombinant P. papatasi acetylcholinesterase (rPpAChE1) to mosquito AChE and identified synthetic carbamates that selectively inhibited rPpAChE1 and circumvented the G119S mutation responsible for high level resistance to anticholinesterases. This study reports the construction, baculovirus expression, and biochemical properties of rPpAChE1 containing the F290V and F331W orthologous mutations from mosquitoes.,Methods: Recombinant PpAChE1 enzymes with or without the F290V, F331W, and G119S orthologous mosquito mutations were expressed in Sf21cells utilizing the baculoviral system. Ellman assays determined changes in catalytic properties and inhibitor sensitivity resulting from wild type and mutant rPpAChE1 containing single or combinations of orthologous mosquito mutations.,Results: Each of the orthologous mutations (F290V, F331W, and G119S) from mosquito AChE significantly reduced inhibition sensitivity to organophosphate or carbamate pesticides, and catalytic activity was lost when they were expressed in combination. Novel synthetic carbamates were identified that significantly inhibited the rPpAChEs expressing each of the single orthologous mosquito mutations.,Conclusions: These novel carbamates could be developed as efficacious insecticides with improved specificity and safety for use in sand fly or mosquito populations expressing the mutant AChEs.,