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Genome datasets for Calonectria henricotiae and C. pseudonaviculata causing boxwood blight disease and related fungal species
,Boxwood blight disease, caused by the fungi Calonectria henricotiae and C. pseudonaviculata, is an emergent threat to natural and managed landscapes worldwide.,Boxwood blight emerged for the first time in the U.K. during the 1990s, then spread rapidly throughout Europe. By 2011, the fungus that causes the disease, Calonectria pseudonaviculata, was found in the U.S., threatening an industry valued at $103 million annually and countless mature landscapes, some dating back to early Colonial times. Since the first U.S. outbreaks, boxwood blight has been identified from a total of 19 states that together comprise 62% of the total U.S. boxwood production. A second pathogen, C. henricotiae, was recently described from five European countries. Infection can be latent, and the pathogen may sequester in less susceptible boxwood cultivars. Because there are no curative treatments—fungicides are at best suppressive of symptoms—infected plants are rendered unfit for sale. If infected plants are not destroyed, they provide a long-lived source of inoculum that spreads the pathogen by spores or resistant survival structures in soil, air, or water. Our goal is to provide knowledge and tools needed to reduce the impact of boxwood blight on the green industry.,This database includes genome datasets from Calonectria pathogens of boxwood and related species.,,
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Blister Rust in Sugar Pine Inventory at Yosemite National Park 2023 - Open Format Dataset
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Invasive white pine blister rust (Cronartium ribicola, WPBR) threatens white pine populations throughout North America. Sugar pine (Pinus lambertiana), for example, has been declining in Sequoia and King Canyon National Parks (SEKI) due to WPBR, as well as other mortality agents, including fire, drought, and mountain pine beetle (Dendroctonus ponderosae, MPB). Whether these declines reflect population trends farther north in Yosemite National Park, however, is largely unknown. To this end, we surveyed 56 plots between June and October, 2023 in Yosemite. To test whether fire impacted WPBR or sugar pine recruitment, 23 plots were established in the Rim Fire footprint. Average extent (% of plots with ≥ 1 infection) and infection rate (% of all live stems with ≥ 1 infection) was 48.2% and 3.7%, respectively, though the extent was much lower in the Rim Fire plots (26.1%) compared to the primary plots (63.6%). Our generalized linear mixed models of infection rate suggested that fire and the presence of alternate hosts were important correlates of WPBR. As fire severity increased, WPBR infections declined, suggesting that high severity fire may dampen infection rates. Additionally, MPB was typically found in larger diameter stems, and the extent was higher in primary plots (54.6%) compared to the Rim Fire plots (30.4%). Recent surveys from SEKI show that sugar pine and WPBR infection rates are declining, likely due to complex interactions with drought, MPB, and fire. Comparable infection rates in Yosemite suggest that both sugar pine and WPBR may be following a similar trajectory. Though long-term monitoring is needed to quantify trends, our results underscore that restoration will help ensure the persistence of this ecologically important species.
Pseudogymnoascus destructans detections by US county 2013-2020
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This data documents the results of sampling for the white-nose syndrome fungus, Pseudogymnoascus destructans (Pd) at the USGS National Wildlife Health Center between 2013-2020. Data are reported on the county level. Locations are accurate to county only. We used data collected at winter locations only (hibernaculum) for this data set.
Pseudogymnoascus destructans detections by US county (2008-2012)
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This data represents the number of positive and negative Pd (Pseudogymnoascus destructans) detections by county over the sampling period 2008-2012. Pd is the fungus that is the causative agent of white-nose syndrome.
Sequoia and Kings Canyon National Parks White Pine Blister Rust Project Dataset (1993-2017)
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This dataset stores white pine blister rust field data collected as part of a project to inventory and monitor white pine blister rust (Cronartium ribicola) in Sequoia and Kings Canyon National Parks. It is related to the Sierra Nevada Network (SIEN) White Pine (Pinus albicaulis, P.balfouriana, P. flexilis) Community Dynamics Monitoring Protocol. The project is entitled: Assessing the severity and rate of spread of an invasive forest pathogen: a foundation for management response in the Sierra Nevada national parks (2015-2017). It focuses on White pine blister rust (WPBR) – an exotic fungal pathogen first introduced into western North America in 1910 – which has contributed to dramatic population declines in several species of Western five-needled pines (the “white pines”). The current project results from a collaboration between SIEN, U.S. Geological Survey, Sequoia and Kings Canyon Field Station (N. Stephenson, A. Das), and academic partners at the University of California Berkeley (J. Battles, J. Dudley). Full contact information is below. This dataset is an Excel spreadsheet created to store and manipulate data associated with specific publications related to the White Pine Blister Rust project. This dataset compiles data from several sources: (1) surveys performed in late 1990’s by Duriscoe and Duriscoe (2002), which established Sequoia and Kings Canyon National Parks' (SEKI) first formal baseline assessment of the extent and severity of WPBR infection; (2) 2013 re-measure surveys - performed by Matt Cahill (Univ. of Vermont; unpublished data) -- that focused on 29% of the Duriscoe plots; and (3) 2015-2017 re-measure surveys -- performed as part of the current collaboration -- which focuses on the remaining 71% of the plots that were not surveyed by Cahill. Data underwent additional quality assurance and quality control procedures in 2018 and 2019. The spreadsheet also includes comparison between the two survey periods (1993-1995 and 2013-2017).