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Incorporating Environmental Variability into Ecosystem-Based Management for Penaeid Shrimp in the Southeast US - NERRS/NSC(NERRS Science Collaborative)
Coastal researchers, fishermen, fishery managers and educators teamed up to understand changes in shrimp populations in response to shifting environmental conditions in estuaries. The Project Shrimping has deep cultural and economic ties to the South Carolina and Georgia coasts, and the southeast US Atlantic coast region as a whole. However, over the past two decades, commercial shrimp landings have been highly variable. Fishery management agencies, extension offices, and several southeastern Reserves have identified the need to better understand how shrimp populations are responding to changing environmental conditions, including warmer winters and altered salinity regimes. To do this work, a diverse team with members from universities, fishery management agencies, fisheries extension offices, and Reserves came together to form the Lowcountry Shrimp Collaborative. The Lowcountry Shrimp Collaborative used a comprehensive approach to examine how environmental conditions in estuaries are affecting abundance and timing of shrimp populations throughout the region through examination of each stage of the shrimp life cycle. Together, the Collaborative: Analyzed and synthesized numerous ongoing, long-term (30+ years) datasets on multiple shrimp life history stages (postlarval, juvenile, sub-adult, adult, commercially harvested) and environmental conditions (water quality, including System-Wide Monitoring Program data); Conducted field sampling targeting shrimp and their prey in salt marsh creeks during spring and summer seasons, over two years, at three southeast Reserves; Ran controlled seawater laboratory experiments to understand the impacts of competition for limited resources between shrimp species during their overlapping periods of estuarine residency; and, Interviewed commercial shrimpers based in Georgia and South Carolina, to better understand historical changes in, and perceptions of environmental impacts on, the shrimp industry in the southeast US. The project found that estuarine water temperature is rising across the region, mainly driven by increases during winter months. Warming temperatures can alter the life histories of shrimp, including shifting body size, altering the timing of migratory cues, and modifying habitat use. These warmer temperatures are also resulting in longer shrimping seasons with shrimpers often able to continue harvesting well into January. These results were confirmed by observations shared by shrimpers, who joined for a project wrap-up event where the team presented results and engaged in lively discussions about research needs and opportunities for collaboration between researchers, managers, and the industry.
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Evaluation of the Ecosystem Services of Shellfish Culture Operations in North Carolina - NERRS/NSC(NERRS Science Collaborative)
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This project will assess the ecosystem services of shellfish farming by measuring impacts of newly established farms in the North Carolina Research Reserve. Because there is an opportunity to assess conditions before farm installation, North Carolina estuaries provide an ideal place to measure these effects. Two years of intensive sampling in and adjacent to oyster farms, concentrating on wild shellfish resources and the physical and chemical environment, will aim to link small-scale changes with larger-scale ecosystem-level alterations. Coastal managers, state agencies, and shellfish farmers will provide input throughout the course of the project to ensure that the study parameters align with decision-making needs. The project will culminate with the production of visualization tools and models to allow resource managers, culturists, and reserve staff members to make better decisions when determining the locations and scales of shellfish farming operations.
West Coast fish, mammal, bird life history and abunance parameters - Developing end-to-end models of the California Current Large Marine Ecosystem
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The purpose of this project is to develop spatially discrete end-to-end models of the California Current LME, linking oceanography, biogeochemistry, food web interactions, habitat, fisheries, economics, monitoring, and management into a common model framework. This framework allows for thought experiments, including evaluation of alternate management strategies, identifying robust indicators, and assessing relative importance of different ecosystem drivers in regulating important processes. NMFS personnel are conducting this work in broad collaboration with other NOAA scientists, academics, and NGOs. The specific work entails model development, scoping issues with stakeholders and policy makers, running scenarios, and analyzing and writing up the results. Products will include peer-reviewed papers, presentations, and workshops with modelers and/or stakeholders. Management audiences include NMFS west coast regions and the PFMC. The project is an on-going, stand-alone project with no firm deadline for completion. Published as Horne et al. 2010 NOAA NWFSC Tech memo 104, with full Excel data sheets: https://www.nwfsc.noaa.gov/publications/scipubs/displayinclude.cfm?incfile=technicalmemorandum2010.inc.
Oyster Reef Projects 2000-2001
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We used a quantitative sampling device to compare nekton use among high-relief live oyster reef, vegetated marsh edge Spartina alterniflora, and nonvegetated bottom habitat types.
Stakeholder-Driven Modeling to Understand Oyster Population Sustainability - NERRS/NSC(NERRS Science Collaborative)
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The Eastern oyster (Crassostrea virginica) is a keystone species in northeast Florida estuaries, including the Guana Tolomato Matanzas (GTM) Reserve. However, scientists, managers and oyster harvesters are concerned about the long-term persistence and viability of local populations. In the GTM Reserve, water quality issues are causing some areas to be closed for harvesting, which could be intensifying harvesting pressure in remaining open areas. Other factors, such as predation, disease, and increased salinity, can also slow growth or kill oysters. This complicated situation recently led stakeholders and reserve staff to establish the GTM Oyster Water Quality Task Force in order to identify causes and collaboratively address the region’s oyster challenges.
eDNA survey
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Scientists at NOAA Northeast Fisheries Science Center (NEFSC) are using environmental DNA (eDNA) to identify fish communities and monitor ecosystems by collecting a water sample and analyzing the DNA found in it, identifying the species that left it behind without capturing a single animal. As animals swim, they shed scales, tissue, and waste, leaving traces of DNA in the water. A water sample is first collected from the ocean and filtered to concentrate DNA in it. NOAA scientists then make millions of copies of a target DNA region through polymerase chain reaction (PCR) to make enough genetic material for high throughput sequencing. The metabarcoding process described above for eDNA analysis allows scientists to look for many species in the same sample. The final step is like a matching game, in which the DNA sequences are compared with a reference library of known species to find a match. The eDNA method is particularly useful for detecting species that are not easily captured, including rare or migratory species. It can also help in areas that are difficult to sample because of challenging ocean conditions, sensitive habitats, or a rugged seafloor. An eDNA analysis provides a snapshot of the community of species at the time of sampling and over time. This can help us detect shifts in marine ecosystems. eDNA samples have been collected on NOAA Ecosystem Monitoring (EcoMon) surveys since 2019. These samples will help develop best eDNA practices using metabarcoding, an innovative way to determine what fish species live in what parts of the ocean without actually seeing any fish.
RESTORE Sponsored Research Project: Ecosystem Modeling to Improve Fisheries Management in the Gulf of Mexico
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This project will integrate information on ecosystem stressors and predator-prey interactions into the fisheries assessment and management process in the Gulf of Mexico.
eDNA Survey
공공데이터포털
Scientists at NOAA's Northeast Fisheries Science Center (NEFSC) are using environmental DNA (eDNA) to identify fish communities and monitor ecosystems by collecting a water sample and analyzing the DNA found in it, identifying the species that left it behind without capturing a single animal. As animals swim, they shed scales, tissue, and waste, leaving traces of DNA in the water. A water sample is first collected from the ocean and filtered to concentrate DNA in it. NOAA scientists then make millions of copies of a target DNA region through polymerase chain reaction (PCR) to make enough genetic material for high throughput sequencing. The metabarcoding process described above for eDNA analysis allows scientists to look for many species in the same sample. The final step is like a matching game, in which the DNA sequences are compared with a reference library of known species to find a match. The eDNA method is particularly useful for detecting species that are not easily captured, including rare or migratory species. It can also help in areas that are difficult to sample because of challenging ocean conditions, sensitive habitats, or a rugged seafloor. An eDNA analysis provides a snapshot of the community of species at the time of sampling and over time. This can help us detect shifts in marine ecosystems. eDNA samples have been collected on NOAA Ecosystem Monitoring (EcoMon) surveys since 2019. These samples will help develop best eDNA practices using metabarcoding, an innovative way to determine what fish species live in what parts of the ocean without actually seeing any fish.
Assessing How Climate Change Will Affect Coastal Habitats in the Northeast - NERRS/NSC(NERRS Science Collaborative)
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A new tool has been developed, the Climate Change Vulnerability Assessment Tool for Coastal Habitats (CCVATCH), to help land managers, decision makers, and researchers develop conservation, management, and restoration plans for coastal habitats. This assessment tool identifies primary sources of vulnerability to assist with prioritizing coastal habitat management actions. As part of this project, four estuarine reserves in New England will conduct assessments of their areas, demonstrating the utility of the tool to support adaptive management in response to climate change. This science transfer project was funded by NOAA through the National Estuarine Research Reserve System Science Collaborative to promote the use of science. It did not produce any new data.
Marine Mammal and Sea Turtle Survey
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The Marine Mammal and Sea Turtle Survey, conducted by the Conservation Ecology Branch at the Northeast Fisheries Science Center, develops abundance and distribution models that incorporate environmental factors to better understand how protected species such as whales, dolphins, and sea turtles use our waters. The program coordinates the data collection and analysis efforts of NOAA Fisheries Northeast and Southeast Science Centers and the U.S. Fish and Wildlife Service Division of Migratory Birds. Through these efforts, we are providing enhanced data to managers and supporting conservation initiatives.
Marine Mammal and Sea Turtle Survey
공공데이터포털
The Marine Mammal and Sea Turtle Survey, conducted by the Conservation Ecology Branch at the Northeast Fisheries Science Center, develops abundance and distribution models that incorporate environmental factors to better understand how protected species such as whales, dolphins, and sea turtles use our waters. The program coordinates the data collection and analysis efforts of NOAA Fisheries Northeast and Southeast Science Centers and the U.S. Fish and Wildlife Service Division of Migratory Birds. Through these efforts, we are providing enhanced data to managers and supporting conservation initiatives.