Species Distribution Models and Model Performance Evaluations of Twenty-four Fishes Native to Pacific Northwest US
공공데이터포털
This data release provides spatial data for species distribution models developed for 24 stream fishes native to the Pacific Northwest, USA and associated model evaluation metrics used to determine the best supported model. These models support a larger analysis for understanding native stream fish vulnerability in the region, specifically population viability analyses built to determine species extinction risk. The models were developed using the Maximum Entropy (MaxEnt) machine learning approach. This approach is best suited for the presence only occurrence data available for our analyses. The point occurrences representing presences in the models were previously collated for the Pacific Northwest Rarity and Climate Sensitivity Index (Moore et al., 2025). The environmental predictors used to develop the models were chosen based on a combination of biological relevance to the included species and being uncorrelated with other selected predictors. Models were predicted across two possible extents for each species, the extent of the species' IUCN range polygon if available or the extent of a convex hull of occurrence records used to build the model.
Presence Absence Database of Fish in the Conterminous United States (ver. 2.0, December 2024)
공공데이터포털
This USGS data release documents presence and absences of 419 fish species in the conterminous United States for 35,918 stream reaches of the National Hydrography Dataset Plus Version 2.1 (NHDPlusV2.1). Sample dates for this dataset span 1990-2019. Fish samples were aligned to the Integrated Taxonomic Information System (ITIS), where each species record was assigned a Taxonomic Serial Number (TSN). The dataset is structured with records representing a stream reach (i.e. comid), sample description (i.e. source, date) and a series of 419 columns representing species where each species column is named as the TSN. Data can be visualized on the NHDPlusV2.1 after a tabular join using the field 'comid' or can be projected and visualized as point data using the latitude and longitude fields (using coordinate reference system NAD83) that represent the midpoint of the stream reach that they were associated with. Data are provided in comma separated value (CSV) format.
Presence Absence Database of Fish in the Conterminous United States (ver. 2.0, December 2024)
공공데이터포털
This USGS data release documents presence and absences of 419 fish species in the conterminous United States for 35,918 stream reaches of the National Hydrography Dataset Plus Version 2.1 (NHDPlusV2.1). Sample dates for this dataset span 1990-2019. Fish samples were aligned to the Integrated Taxonomic Information System (ITIS), where each species record was assigned a Taxonomic Serial Number (TSN). The dataset is structured with records representing a stream reach (i.e. comid), sample description (i.e. source, date) and a series of 419 columns representing species where each species column is named as the TSN. Data can be visualized on the NHDPlusV2.1 after a tabular join using the field 'comid' or can be projected and visualized as point data using the latitude and longitude fields (using coordinate reference system NAD83) that represent the midpoint of the stream reach that they were associated with. Data are provided in comma separated value (CSV) format.
Fish community and species distribution predictions for streams and rivers of the Chesapeake Bay Watershed
공공데이터포털
This data release contains predictions of selected fish community metrics and fish species occurrence using Random Forest models with landscape data for inland reaches across the Chesapeake Bay Watershed (CBW). Predictions were made at four time intervals (2001, 2006, 2011, and 2016) according to changes in landcover using the National Land Cover Database (NLCD). The fish sampling data used to compute these metrics were compiled from various fish sampling programs conducted by state and federal agencies, county governments, universities, and river basin commissions across the watershed. Community metrics describe composition, tolerances, habitat preferences, and functional traits of fish communities (and were derived from Krause and Maloney, 2021). Community analyses were developed for four aggregated Level III ecoregions: Northern Appalachians (NAP), Southern Appalachians [split into two sub-regions; the SAP-Piedmont (Piedmont and Northern Piedmont Ecoregions; SAPPIED] and other ecoregions [SAPNW]) and the Coastal Plains (CPL), and a final index was calculated for each ecoregion as the average of selected metric deciles with higher scores inferring less biologically altered (i.e., better) conditions. Species distribution models were created for key sensitive and gamefish species (including Brook Trout, Northern Hog Sucker, Smallmouth Bass, and Torrent Sucker) to predict species occurrence. Uncertainty was calculated for both approaches using model prediction intervals. For complete data descriptions and data interpretation see associated publication (Maloney et al., 2022; https://doi.org/10.1016/j.ecolind.2021.108488).
Aquatic Gap Analysis Project (AGAP) Aquatic Species Distribution Modeling on the National Hydrography Dataset Plus Version 2.1 (ver. 2.0, December 2024)
공공데이터포털
This USGS data release contains products that resulted from aquatic species distribution modeling in the United States on the National Hydrography Dataset Plus Version 2.1. Source data, supporting code and model results are documented in this data release. The file species_model_list.csv provides a list of most recent models for each combination of species, habitat, and region.
Non-native fishes of the central Indian River Lagoon
공공데이터포털
We provide a comprehensive review of the status of non-native fishes in the central Indian River Lagoon (from Cape Canaveral to Grant-Valkaria, east of I-95) through literature review and field surveys. Historical records exist for 17 taxa (15 species, one hybrid, one species complex). We found historical records for one additional species and collected one species in our field survey that had never been recorded in the region before (and which we eradicated). Thus, we evaluate 19 total taxa herein. Of these, we document range expansion of four salt-tolerant cichlid species, extirpation of six species that were previously recorded from the area and eradication of three species. There was no noticeable change in geographic range for one widespread species and the records for one species are doubtful and may be erroneous. Currently, there is not enough information to evaluate geographic range for four species although at least one of these is established. We provide information on how non-native fishes may interact with or exacerbate phytoplankton blooms and resulting trophic cascades.