FY20 will mark the 23nd year of sampling, making the Juvenile Salmon and Ocean Ecosystem Survey (JSOES) the longest running salmon survey on the west coast. JSOES has clearly demonstrated correlations between ocean conditions and the distribution, abundance, and survival of juvenile Columbia River (CR) salmon in the Northern California Current (NCC) nearshore ecosystem. For example, our ocean indicators provide managers from the federal and state governments, tribes, and other agencies/groups the ability to forecast adult returns one to two years in advance for coho and spring/summer Chinook salmon. We continue to show the importance of evaluating ocean conditions to support management decisions and to provide context for efforts by the Northwest Power and Conservation Council (NWPCC) and BPA to restore and enhance salmon production. The primary goal of our work is to develop a mechanistic understanding of how trophic dynamics and conditions in the ocean and CR plume affect survival of juvenile salmonids. This knowledge will allow us to improve forecasts in a quantitative rather than qualitative manner, and decouple the effects of mitigation efforts in the freshwater environment from the effects of a changing ocean environment. These improved forecasts will lead to well-informed recommendations for an ecosystem approach to management strategies based on the full suite of river, plume, and ocean environments. Nekton and juvenile salmon collections from surface trawl.

This dataset contains 2-boat tow, push net and scoop net catches from the Yukon River Delta for 2014

The Strait of Juan de Fuca Intensively Monitored Watershed (IMW) began in 2004 to test the watershed-scale response of steelhead and coho salmon to watershed restoration. The Strait IMW includes two treatment watersheds (East Twin River and Deep Creek) and one control watershed (West Twin River). Restoration treatments included LWD placement, road and culvert removal, off-channel habitat creation, and riparian planting. Monitoring of physical habitat as well as coho and steelhead parr densities began in 2004 using the EPA’s EMAP site selection and sampling protocols. Smolt and adult monitoring predates the IMW program and began as early as 1998 in some watersheds. Preliminary results suggest an increase in pool habitat and small increases in steelhead adults and smolts in East Twin River, as well as adult coho in Deep Creek. PIT tagging has revealed a large outmigration of age-0 coho in the fall that contributes to the adult return, stream swapping by juveniles, and varying return times for coho adults. Current research has answered a portion of our original questions and has raised new ones. Restoration treatments were completed fairly recently or are still in progress. As habitat typically does not respond immediately to treatment, additional years of monitoring are needed to determine watershed-scale fish response. Moving forward, analysis of otoliths to validate PIT tag data and new restoration methods such as carcass or nutrient enhancement may be merited. PIT tagging and habitat data. Includes fish weight, length, location, and PIT tag number. Habitat data includes wood measurements and stream surveys.

FY20 will mark the 23nd year of sampling, making the Juvenile Salmon and Ocean Ecosystem Survey (JSOES) the longest running salmon survey on the west coast. JSOES has clearly demonstrated correlations between ocean conditions and the distribution, abundance, and survival of juvenile Columbia River (CR) salmon in the Northern California Current (NCC) nearshore ecosystem. For example, our ocean indicators provide managers from the federal and state governments, tribes, and other agencies/groups the ability to forecast adult returns one to two years in advance for coho and spring/summer Chinook salmon. We continue to show the importance of evaluating ocean conditions to support management decisions and to provide context for efforts by the Northwest Power and Conservation Council (NWPCC) and BPA to restore and enhance salmon production. The primary goal of our work is to develop a mechanistic understanding of how trophic dynamics and conditions in the ocean and CR plume affect survival of juvenile salmonids. This knowledge will allow us to improve forecasts in a quantitative rather than qualitative manner, and decouple the effects of mitigation efforts in the freshwater environment from the effects of a changing ocean environment. These improved forecasts will lead to well-informed recommendations for an ecosystem approach to management strategies based on the full suite of river, plume, and ocean environments. Lab Lengths, weight, genetics, IGF-1 (growth), and otolith microchemistry from juvenile salmonids.

The dataset contains Aluette and Mamou trawl catches from the Yukon delta for 2014 and 2015.

In the spring of 2003, California Department of Fish and Game (CDFG) personnel began quarterly sampling of Salton Sea fish at fourteen stations around the sea, as the basis of a long term monitoring program. To allow comparison of current and future monitoring efforts by CDFG to past results, the protocol was adapted from those previously used by researchers at the Salton Sea. Each quarter, if conditions allow, this protocol will produce about 816 net-hours of sampling. To date data collection was started in the spring of 2003, continuing quarterly. Data collection is ongoing as of 2008. Two seasons were missed due to unavailability of launch sites: Fall 2007 and Winter 2007. *Note: This dataset should be viewed with the Quarterly Water Quality Surveys - Salton Sea [ds429] dataset. Methods: The 11 sampling sites comprise three broad habitat types: pelagic (3 sites), near-shore (8 sites), and estuarine (3 sites). The pelagic sites are in the approximate middles of the north basin, south basin and inter-basin areas of the Sea. The near-shore sites are spaced widely apart, four each, near the west and east shores, to capture as much breadth of habitat as possible. The estuarine sites are in the body of the Sea, close enough to the mouths of the New, Alamo, and Whitewater Rivers, to be under the influence of their outflows. Sampling takes place during each of the putative seasons, as follows: spring- April and May; summer- July and August; fall- October and November; winter- January and February. We attempt to compress the total sampling period into as few days as possible, to the extent that the weather, equipment maintenance, and personnel scheduling constraints allow. Nets are typically set at one or two sites in the morning, and hauled in after approximately 24 hours. The exact number of hours set is recorded for each net, to the nearest quarter-hour. Fish are sampled by deploying multi-panel monofilament gill nets with 6 X 30 foot panels of 0.5, 1, 2, 3, and 4 inch mesh. Two nets are set at all sites at the waters surface. The nets are set far enough apart to allow room for maneuvering a boat during setting and retrieval, usually 100-200 meters. The nets at near-shore and estuarine sites are set in 2.5 to 4.5 meters of water, typically 200-300 meters from the shore. Two additional nets are set at the bottom of water column at the three pelagic sites. The conditions fish experience at the bottom in deep water is different enough from the surface water, in dissolved oxygen, light, food availability and temperature, that this can be considered a discrete habitat, and thus we sample it as though it were a separate site. At the time of each set and retrieval, water depth, water temperature, conductivity, salinity, and dissolved oxygen are measured and recorded. When nets are pulled in the following day, all fish are removed and immediately stored on ice. Data are collected from these fish as soon as possible, almost always the same day they are hauled in. All fish are identified to species level and counted. For the four sport fish in the Salton Sea, (tilapia, Gulf croaker, orangemouth corvina and sargo) weights, lengths (fork length), sex, physical condition, and reproductive status are recorded. Fish above five pounds are weighed to the nearest ounce. Fish below five pounds are weighed to the nearest half ounce. Lengths of fish under 50 centimeters are recorded to the nearest millimeter. Lengths of fish over 50 centimeters are recorded to the nearest centimeter. The sex of adult fish is determined by dissection. A sample of at least ten fish of each species is also dissected to determine physical condition and breeding status. Changes to Protocol after Year One: For previous researchers, deep water habitats provided some low level of productivity for the fisheries, and were important habitat components to sample. During the first year of sampling, however, the three deep water sites (north basin, south basin and inter-basin)

In the spring of 2003, California Department of Fish and Game (CDFG) personnel began quarterly sampling of Salton Sea fish at fourteen stations around the sea, as the basis of a long term monitoring program. To allow comparison of current and future monitoring efforts by CDFG to past results, the protocol was adapted from those previously used by researchers at the Salton Sea. Each quarter, if conditions allow, this protocol will produce about 816 net-hours of sampling. To date data collection was started in the spring of 2003, continuing quarterly. Data collection is ongoing as of 2008. Two seasons were missed due to unavailability of launch sites: Fall 2007 and Winter 2007. *Note: This dataset should be viewed with the Quarterly Water Quality Surveys - Salton Sea [ds429] dataset. Methods: The 11 sampling sites comprise three broad habitat types: pelagic (3 sites), near-shore (8 sites), and estuarine (3 sites). The pelagic sites are in the approximate middles of the north basin, south basin and inter-basin areas of the Sea. The near-shore sites are spaced widely apart, four each, near the west and east shores, to capture as much breadth of habitat as possible. The estuarine sites are in the body of the Sea, close enough to the mouths of the New, Alamo, and Whitewater Rivers, to be under the influence of their outflows. Sampling takes place during each of the putative seasons, as follows: spring- April and May; summer- July and August; fall- October and November; winter- January and February. We attempt to compress the total sampling period into as few days as possible, to the extent that the weather, equipment maintenance, and personnel scheduling constraints allow. Nets are typically set at one or two sites in the morning, and hauled in after approximately 24 hours. The exact number of hours set is recorded for each net, to the nearest quarter-hour. Fish are sampled by deploying multi-panel monofilament gill nets with 6 X 30 foot panels of 0.5, 1, 2, 3, and 4 inch mesh. Two nets are set at all sites at the waters surface. The nets are set far enough apart to allow room for maneuvering a boat during setting and retrieval, usually 100-200 meters. The nets at near-shore and estuarine sites are set in 2.5 to 4.5 meters of water, typically 200-300 meters from the shore. Two additional nets are set at the bottom of water column at the three pelagic sites. The conditions fish experience at the bottom in deep water is different enough from the surface water, in dissolved oxygen, light, food availability and temperature, that this can be considered a discrete habitat, and thus we sample it as though it were a separate site. At the time of each set and retrieval, water depth, water temperature, conductivity, salinity, and dissolved oxygen are measured and recorded. When nets are pulled in the following day, all fish are removed and immediately stored on ice. Data are collected from these fish as soon as possible, almost always the same day they are hauled in. All fish are identified to species level and counted. For the four sport fish in the Salton Sea, (tilapia, Gulf croaker, orangemouth corvina and sargo) weights, lengths (fork length), sex, physical condition, and reproductive status are recorded. Fish above five pounds are weighed to the nearest ounce. Fish below five pounds are weighed to the nearest half ounce. Lengths of fish under 50 centimeters are recorded to the nearest millimeter. Lengths of fish over 50 centimeters are recorded to the nearest centimeter. The sex of adult fish is determined by dissection. A sample of at least ten fish of each species is also dissected to determine physical condition and breeding status. Changes to Protocol after Year One: For previous researchers, deep water habitats provided some low level of productivity for the fisheries, and were important habitat components to sample. During the first year of sampling, however, the three deep water sites (north basin, south basin and inter-basin)

The Southeast Alaska Coastal Monitoring (SECM) project in Alaska was initiated in 1997 by the Auke Bay Laboratory, National Marine Fisheries Service, to study the habitat use and early marine ecology of juvenile (age-0) Pacific salmon (Oncorhynchus spp.) and associated epipelagic ichthyofauna. This research has been conducted to meet several needs identified in the National Oceanic and Atmospheric Administration (NOAA) Fisheries 2006-2011 Strategic Plan, the North Pacific Anadromous Fisheries Commission (NPAFC) 20062010 Science Plan, and the Gulf of Alaska Global Ocean Ecosystem Dynamics (GLOBEC) Program.

The California Monitoring Plan (CMP) salmonid monitoring areas and associated population data are part of an ongoing effort to summarize existing and past salmonid monitoring efforts in the areas identified by Adams et al. 2011. These data are compiled and maintained by the California Department of Fish and Wildlife with the cooperation of monitoring practitioners. Updates and associated outreach are intended to occur on an annual basis. Data were created from several sources and existing datasets: some monitoring areas were accurately depicted using the USGS National Hydrography Dataset (NHD), other monitoring areas were approximated using the monitoring point location and the USGS StreamStats tool to depict the watershed area above that point. The areas are intended to represent the approximate extent of sampling within sub-basins, watershed areas, or regions. For example, the spatial extent of monitoring using a fixed count station is approximated by accounting for all anadromous fish habitat upstream of the sampling location. Therefore, the area is approximated by entering the monitoring location coordinates into the StreamStats tool. The resulting shapefile is then examined to ensure the watershed area did not include habitat above dams or barriers to migration. Areas were clipped when needed. The data user should recognize that errors may have occurred during production of this dataset, changes may have occurred to the external sources used post transfer, and for other possible reasons. The population metrics summarized in the associated tabular data may be regarded as spatially limited, temporally limited, and not considered a complete estimate for the population being described. The data user is advised to refer to the annual reports cited in the Source field from the tabular data for additional details regarding monitoring within the area spatially depicted.Abbreviation Definitions: SGS = Spawning Ground Survey, RM = River Mile, RST = Rotary Screw Trap, RKM = River Kilometer, FCS = Fixed Count Station, STH = Steelhead, CC = Coastal Chinook, DS = Downstream

Sampling juvenile salmon and associated fishes in open waters of the lower Columbia River estuary. Field work includes bi-weekly sampling during the spring outmigration (Apr-June), and monthly sampling throughout the summer and fall. We use a purse seine to sample open water habitats. Our objectives are to document the seasonal and interannual variation in juvenile salmon immediately prior to ocean entry, with respect to abundance, size, origins (H/W), stocks, food habitats, and parasites/pathogens. We also document the larger estuarine fish community, which serves a critical role as prey for juvenile salmon predators. Abundance and size of fish caught in Columbia estuary.