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Evaluating Oyster Reefs as Habitat: Comparing the Utility of Ecological Metrics to Assess Ecosystem Function - NERRS/NSC(NERRS Science Collaborative)
This multi-reserve catalyst project compared established and emerging methods for assessing intertidal oyster reef community structure and ecosystem function. With their partners, the project catalyzed a strong community of practice in the Southeastern U.S. to support management efforts related to oyster reef conservation and the advancement of monitoring protocol. The Project Intertidal oyster reefs provide key habitat for a diverse and productive community of estuarine fauna, yet have declined drastically due to overfishing and disease outbreaks. With increased conservation and restoration efforts for intertidal oyster reefs, there is a need for more efficient ways of assessing oyster reefs as well as more holistic understandings of how oyster reefs function as habitats for other estuarine animals. However, assessing the ecosystem benefits of intertidal oyster reefs is challenging because the reefs occupy a dynamic tidal environment characterized by highly turbid water. Established sampling techniques for assessing intertidal oyster reefs are labor intensive and therefore difficult to replicate at multiple sites, limiting the ecological information they can provide, especially at large scales. In contrast, emerging techniques prove promising for examining intertidal oyster reef community structure and ecosystem function. Collaborating with four reserves and five universities, this project compared established sampling techniques for assessing intertidal oyster reefs with four emerging methods that each provide unique ecological information: 1. High-Resolution Acoustic Imaging 2. Stable Isotope Analysis 3. eDNA Metabarcoding 4. Oyster Disease Assays The project team applied these methods alongside traditional methods for collection of free-swimming marine organisms via nets/traps at four reserves in the southeastern U.S. Afterwards, the team convened with their partners and intended users to examine the results and evaluate the potential utility and feasibility of incorporating the emerging methods into their research and monitoring programs. Users overwhelmingly expressed that expanded application of these emerging techniques could improve the assessment of the function of multiple different oyster reef types. The results of this Catalyst project, along with the collaborative network that project has built, bolsters technical capacity at reserves and state agencies to understand the function of critical habitats.
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Oyster Reef Projects 2000-2001
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We used a quantitative sampling device to compare nekton use among high-relief live oyster reef, vegetated marsh edge Spartina alterniflora, and nonvegetated bottom habitat types.
Stakeholder-Driven Modeling to Understand Oyster Population Sustainability - NERRS/NSC(NERRS Science Collaborative)
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The Eastern oyster (Crassostrea virginica) is a keystone species in northeast Florida estuaries, including the Guana Tolomato Matanzas (GTM) Reserve. However, scientists, managers and oyster harvesters are concerned about the long-term persistence and viability of local populations. In the GTM Reserve, water quality issues are causing some areas to be closed for harvesting, which could be intensifying harvesting pressure in remaining open areas. Other factors, such as predation, disease, and increased salinity, can also slow growth or kill oysters. This complicated situation recently led stakeholders and reserve staff to establish the GTM Oyster Water Quality Task Force in order to identify causes and collaboratively address the region’s oyster challenges.
A Future for Oysters Along the Pacific - NERRS/NSC(NERRS Science Collaborative)
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Oysters are the tiny superheroes of coastal environments. They enhance water quality, create habitat, and protect shorelines from storms and erosion. Along the Pacific Coast, native oysters are in decline, due in part to sedimentation, inadequate protection, and unsustainable harvests. Planning for a future that includes healthy native oyster populations depends on our ability to select sites for restoration that not only account for these challenges but also the impacts of a changing climate.
Georgia Oyster Reef Habitat 2015
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These data represent oyster reefs in Georgia's coastal waterways, extending from Chatham County south to Glynn County. A pilot project for certain coastal regions was completed in 2013, with the remaining project areas finished in 2015. This mapping project was conducted under contract to the Georgia Department of Natural Resources with the goal of inventorying oyster reefs in Georgia's coastal waterways. Oyster reef extent polygons were created through heads-up digitization using 4-band, 6-inch resolution DMC digital aerial imagery as the source. This imagery was collected between November 2012 and February 2013. The minimum mapping unit is 5 square meters, though discretion was used to collect features smaller than this. Partners: Georgia Department of Natural Resources
Building a Coastwide Olympia Oyster Network to Improve Restoration Outcomes - NERRS/NSC(NERRS Science Collaborative)
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To build communication, coordination, and information sharing among scientists and restoration practitioners, this project established a coastwide network from Baja California to British Columbia, the Native Olympia Oyster Collaborative. The project team synthesized past restoration projects, developed an experimental design for future research, and created educational and outreach materials that convey the importance of native oyster restoration on the Pacific coast. These efforts engaged communities in Olympia oyster restoration, provided tools to enhance future restoration outcomes, and strengthened connections among researchers and practitioners to support ongoing collaboration. This catalyst project was funded by NOAA through the National Estuarine Research Reserve System Science Collaborative to advance collaborative science. It did not produce any new data.
1999 RoxAnn Data Points from Apalachicola Bay, Florida
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The Apalachicola Bay National Estuarine Research Reserve and the NOAA Office for Coastal Management worked together to map benthic habitats within Apalachicola Bay, Florida. The bay and the lower portions of four distributaries were surveyed on 11-22 October 1999 using three benthic sampling techniques. This data set represents the information gathered from a RoxAnn acoustic sensor. The instrument was used to characterize bottom type by extracting data on bottom roughness and bottom hardness from the primary and secondary sounder echoes. The data is classified on-the-fly, using the Sediment Profile Images and grab samples collected for field validation, and subject to a post-processing classification. The RoxAnn data points were exported into a geographic information system (GIS) and post-processed to remove unreliable data points and re-classified. This data set is comprised of the cleaned, attributed point data. The attributes include location, date, time, depth, field derived classification, and the classification derived from post-processing the data. Original contact information: Contact Org: NOAA Office for Coastal Management Phone: 843-740-1202 Email: coastal.info@noaa.gov
Evaluating Whether Oyster Aquaculture Can Help Restore Water Quality - NERRS/NSC(NERRS Science Collaborative)
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The project team established an experiment that mimicked commercial aquaculture practices and allowed for a robust comparison of nitrogen removal rates from three commonly used gear types: floating bags of oysters, oyster condos suspended in midwater, and bottom cages of oysters. All gear was deployed in the same environmental setting (Waquoit Bay, Falmouth, MA) and maintained by the Town of Falmouth in a manner that a typical grower would follow. The growing systems were maintained for two full growing seasons (2018 and 2019) and compared to a nearby control site. Every two weeks during the growing season, the team conducted a series of measurements to provide a robust estimate of nitrogen fluxes and microbial activity below each of the aquaculture operations. Measurements included: (1) nutrient analyses of sediment, porewater and bottom water samples, (2) genetic sequencing of RNA and DNA extracted from sediment samples to determine the presence and activity level of certain bacteria; and 3) measurements of N2 fluxes from sediment cores placed in flux chambers to measure N2 production rates. All three oyster growing methods enhanced nitrogen removal relative to the control site. However, gene expression data indicate that nitrogen retention may be induced under some gear, particularly after the end of July under bottom cages, and to a lesser extent other gear types.
The Coastal Studies Institute (CSI) North Carolina Renewable Ocean Energy Program (NCROEP) Raw Audio Data
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The North Carolina Renewable Ocean Energy Program (NCROEP) is evaluating the feasibility of extracting energy from the Gulf Stream off the coast of Cape Hatteras, North Carolina, USA. Characterizing the soundscape in this region is one of the environmental and ecological assessment goals of the program. To accomplish this, the UNC Coastal Studies Institute deploys a mooring on the continental slope off Cape Hatteras. The mooring is equipped with a hydrophone, a CTD, and an Acoustic Doppler Current Profiler (ADCP). To request ancillary data (CTD, ADCP), contact Dr. Lindsay Dubbs.
CRED Rapid Ecological Assessment Reef Fish Survey at Lisianski, Northwestern Hawaiian Islands in 2010
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To support a long-term NOAA Coral Reef Conservation Program (CRCP) for sustainable management and conservation of coral reef ecosystems, from 20100904 to 20100929, reef fish assessment surveys were conducted, as a part of Rapid Ecological Assessments (REA), during the Pacific Reef Assessment and Monitoring Program (RAMP) Cruise HA1007 in the Northwestern Hawaiian Islands region by the Coral Reef Ecosystem Division (CRED) at the NOAA Pacific Islands Fisheries Science Center (PIFSC). During the cruise, 25 REA sites were surveyed at Lisianski in the Northwestern Hawaiian Islands region. At each REA site, fish biologists entered the water and conducted a fine-scale (~700 m^2) and high degree of taxonomic resolution REA survey to assess and monitor species diversity, size distribution, and abundance of fish in shallow-water hard-bottom (less than 30 m) habitats. Reef fish assessment surveys were focused on cataloging the diversity (species richness), abundance (numeric density) and biomass (fish mass per unit area) of diurnally active reef fish assemblages. The stationary point count (SPC) method was used to quantify reef fish species. Two divers lay out a 30 m transect line, and position themselves at the 7.5 and 22.5 meter marks. The SPC biologist then records estimated size and abundance of all fish within a visually estimated 15-m diameter cylinder centered on the stationary diver (7.5-m radius, total area ~ 177m^2 per cylinder). The diver first spends 5 minutes identifying all fish species in the cylindrical area, then proceeds to count and estimate size (total length) for each in a series of "instantaneous" point counts or sweeps of the cylinder. Fish were identified at the species level, wherever possible. All reef-associated fish, including those in the water column, were surveyed. The survey time for each stationary point count survey was approximately 20 min and generally four stationary point count surveys (two per diver) were conducted at each fish REA site. After completing REA surveys, divers noted the presence, at the survey site, of any unusual fish species not counted during SPC counts, in order to facilitate species lists per location.
NOAA NCCOS: New England Red Tide Research
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Alexandrium blooms are one of several algal bloom types often called "red tides," but more correctly referred to as Harmful Algal Blooms (HABs). Alexandrium produces a potent toxin that accumulates in shellfish and can cause illness in humans who eat contaminated shellfish.