NCCOS' Center for Coastal Monitoring and Assessment (CCMA) is working closely with a number of divisions in the USVI DPNR (e.g., Divisions of Fish and Wildlife and Coastal Zone Management), the University of the Virgin Islands (UVI), and The Nature Conservancy (TNC) to develop the baseline characterization of chemical contamination, toxicity, and the marine resources in the St. Thomas East End Reserve (STEER) in St. Thomas, USVI. The STEER contains extensive mangroves, seagrass beds and coral reefs. Within the watershed, however, are a large active landfill, numerous marinas, various commercial/industrial activities, an EPA Superfund Site, resorts, and several residential areas served by individual septic systems. This baseline assessment will provide managers with critical information needed to help preserve and restore habitats, including a number of nursery areas within the STEER that are important to commercial and recreational fisheries. As part of the characterization, a field survey was conducted in June 2012 to conduct a biological assessment of fish communities and benthic habitats within the STEER and at select hardbottom locations adjacent to STEER. The basis for this work was the nearshore benthic habitats maps (less than 100 ft depth) created by NOAA's Biogeography Program in 2001 and NOS' bathymetry models. Using ArcView GIS software, the digitized habitat maps were stratified to select sampling stations. Sites were randomly selected within strata to ensure coverage of the entire study region. The habitat stratification was divided into three major habitat types: hardbottom which includes reef, pavement, etc. inside STEER; softbottom which consists of sand and seagrass, and mangrove. In addition, two harbottom areas outside STEER of interest to STEER's Core Team were included as a separate stratum. Using standardized protocols of NOAA's Coral Reef Ecosystem Monitoring Project, the fish and benthic habitat survey was conducted by two scientific divers. During each dive one diver quantified the species and size of fish within a 25 x 4 m transect while a second diver characterized the habitat and invertebrate community.

NCCOS' Center for Coastal Monitoring and Assessment (CCMA) is working closely with a number of divisions in the USVI DPNR (e.g., Divisions of Fish and Wildlife and Coastal Zone Management), the University of the Virgin Islands (UVI), and The Nature Conservancy (TNC) to develop the baseline characterization of chemical contamination, toxicity, and the marine resources in the St. Thomas East End Reserve (STEER) in St. Thomas, USVI. The STEER contains extensive mangroves, seagrass beds and coral reefs. Within the watershed, however, are a large active landfill, numerous marinas, various commercial/industrial activities, an EPA Superfund Site, resorts, and several residential areas served by individual septic systems. This baseline assessment will provide managers with critical information needed to help preserve and restore habitats, including a number of nursery areas within the STEER that are important to commercial and recreational fisheries. As part of the characterization, a field survey was conducted in June 2012 to conduct a biological assessment of fish communities and benthic habitats within the STEER and at select hardbottom locations adjacent to STEER. The basis for this work was the nearshore benthic habitats maps (less than 100 ft depth) created by NOAA's Biogeography Program in 2001 and NOS' bathymetry models. Using ArcView GIS software, the digitized habitat maps were stratified to select sampling stations. Sites were randomly selected within strata to ensure coverage of the entire study region. The habitat stratification was divided into three major habitat types: hardbottom which includes reef, pavement, etc. inside STEER; softbottom which consists of sand and seagrass, and mangrove. In addition, two harbottom areas outside STEER of interest to STEER's Core Team were included as a separate stratum. Using standardized protocols of NOAA's Coral Reef Ecosystem Monitoring Project, the fish and benthic habitat survey was conducted by two scientific divers. During each dive one diver quantified the species and size of fish within a 25 x 4 m transect while a second diver characterized the habitat and invertebrate community.

This fish and benthic composition database is the result of a multifaceted effort described below. The intent of this work is five fold: 1) To spatially characterize and monitor the distribution, abundance, and size of both reef fishes and macro-invertebrate (conch, lobster, Diadema); 2) To relate this information to in-situ data collected on associated benthic composition parameters; 3) To use this information to establish the knowledge base necessary for enacting management decisions in a spatial setting; 4) To establish the efficacy of those management decisions; and 5) To work with the National Coral Reef Monitoring Program to develop data collection standards and easily implemented methodologies for transference to other agencies and to work toward standardizing data collection throughout the US states and territories. Toward this end, the Center for Coastal Monitoring and Assessment's Biogeography Branch (BB) has been conducting research in Puerto Rico and the US Virgin Islands since 2000 and 2001, respectively. It is critical, with recent changes in management at both locations (e.g. implementation of MPAs) as well as proposed changes (e.g. zoning to manage multiple human uses) that action is taken now to accurately describe and characterize the fish/macro-invertebrate populations in these areas. It is also important that BB work closely with the individuals responsible for recommending and implementing these management strategies. Recognizing this, BB has been collaborating with partners at the University of Puerto Rico, National Park Service, US Geological Survey and the Virgin Islands Department of Planning and Natural Resources.To quantify patterns of spatial distribution and make meaningful interpretations, we must first have knowledge of the underlying variables determining species distribution. The basis for this work therefore, is the nearshore benthic habitats maps (less than 100 ft depth) created by NOAA's Biogeography Program in 2001 and NOS' bathymetry models. Using ArcView GIS software, the digitized habitat maps are stratified to select sampling stations. Sites are randomly selected within these strata to ensure coverage of the entire study region and not just a particular reef or seagrass area. At each site, fish, macro-invertebrates, and benthic composition information is then quantified following standardized protocols. By relating the data collected in the field back to the habitat maps and bathymetric models, BB is able to model and map species level and community level information. These protocols are standardized throughout the US Caribbean to enable quantification and comparison of reef fish abundance and distribution trends between locations. Armed with the knowledge of where "hot spots" of species richness and diversity are likely to occur in the seascape, the BB is in a unique position to answer questions about the efficacy of marine zoning strategies (e.g. placement of no fishing, anchoring, or snorkeling locations), and what locations are most suitable for establishing MPAs. Knowledge of the current status of fish/macro-invertebrate communities coupled with longer term monitoring will enable evaluation of management efficacy, thus it is essential to future management actions.

Data collected from plankton collecting gear aboard the NOAA Ship NANCY FOSTER during cruise #NF0805, March 11th - March 24th, 2008 as part of the Coral Reef Ecosystem Research (CRER) project and from inshore larval collections in St. Thomas April 1-8th, 2008. Data are in spreadsheet format. Each file contains a header that describes the column data within.

Habitat maps were created as part of a larger ecological assessment conducted by NOAA's National Ocean Service (NOS), Biogeography Program, for Salt River Bay National Historic Park and Ecological Preserve (National Park Service). Aerial photographs were obtained for 2000 from the National Geodetic Survey, and were orthorectified by the Biogeography Program. A classification scheme was set up with 20 benthic habitat types, 19 land cover types, and 13 mangrove habitat types. For this map of seagrass and mangrove habitats during 1992 only the 3 seagrass, and 14 mangrove classification categories were used. These were mapped directly into a GIS system through visual interpretation of orthorectified aerial photographs.

Environmental Sensitivity Index (ESI) maps are an integral component in oil-spill contingency planning and assessment. They serve as a source of information in the event of an oil spill incident. ESI maps contain three types of information: shoreline habitats (classified according to their sensitivity to oiling), sensitive biological resources, and human-use resources. Most often, this information is plotted on 7.5 minute USGS quadrangles, although in the Alaska ESI maps, USGS topographic maps at scales of 1:63,360 and 1:250,000 are used, and in other ESI maps, NOAA charts have been used as the base map. Collections of these maps, grouped by state or a logical geographic area, are published as ESI atlases. Digital data have been published for most of the U.S. shoreline, including Alaska, Hawaii, and Puerto Rico.

This web mapping application is a compilation of geoscientific data collected and published by the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center (USGS SPCMSC). This application does not serve as a complete archive of all the geoscientific data collected by the center, but highlights frequently published data types. Data within this web application include: seismic data extents, seismic survey tracklines (boomer, chirp, and minisparker), bathymetric footprints (singlebeam, multibeam and/or interferometric swath), light detection and ranging (lidar) footprints, sidescan sonar mosaics, and geologic cores and samples (coral, coral reef, limestone, and sediment). The web application is currently published using Esri's (Environmental Systems Research Institute) ArcGIS Instant Apps.

This web mapping application is a compilation of geoscientific data collected and published by the U.S. Geological Survey St. Petersburg Coastal and Marine Science Center (USGS SPCMSC). This application does not serve as a complete archive of all the geoscientific data collected by the center, but highlights frequently published data types. Data within this web application include: seismic data extents, seismic survey tracklines (boomer, chirp, and minisparker), bathymetric footprints, bathymetric (singlebeam, multibeam and/or interferometric swath) Digital Elevation Models (DEMs), light detection and ranging (lidar) footprints, side-scan sonar mosaics, and geologic cores and samples (coral, coral reef, limestone, and sediment). The web application was published using Esri's (Environmental Systems Research Institute) ArcGIS Online's Web AppBuilder.

Environmental Sensitivity Index (ESI) maps are an integral component in oil-spill contingency planning and assessment. They serve as a source of information in the event of an oil spill incident. ESI maps contain three types of information: shoreline habitats (classified according to their sensitivity to oiling), sensitive biological resources, and human-use resources. Most often, this information is plotted on 7.5 minute USGS quadrangles, although in the Alaska ESI maps, USGS topographic maps at scales of 1:63,360 and 1:250,000 are used, and in other ESI maps, NOAA charts have been used as the base map. Collections of these maps, grouped by state or a logical geographic area, are published as ESI atlases. Digital data have been published for most of the U.S. shoreline, including Alaska, Hawaii, and Puerto Rico.