The Southeast Alaska Coastal Monitoring (SECM) project in Alaska was initiated in 1997 by the Auke Bay Laboratory, National Marine Fisheries Service, to study the habitat use and early marine ecology of juvenile (age-0) Pacific salmon (Oncorhynchus spp.) and associated epipelagic ichthyofauna. This research has been conducted to meet several needs identified in the National Oceanic and Atmospheric Administration (NOAA) Fisheries 2006-2011 Strategic Plan, the North Pacific Anadromous Fisheries Commission (NPAFC) 20062010 Science Plan, and the Gulf of Alaska Global Ocean Ecosystem Dynamics (GLOBEC) Program. A primary goal of the 2006-2011 NOAA Fisheries Strategic Plan is to Protect, Restore, and Manage the Use of Coastal and Ocean Resources Through an Ecosystem Approach to Management. SECM research addresses the five fundamental activities identified under this goal, which include: Monitor and observe the land, sea, atmosphere. Understand and describe how natural systems work together, Assess and predict the changes in natural systems, Engage, advise, and inform individuals, partners, communities, and industries, and, Manage coastal and ocean resources SECM research emphasizes long-term monitoring of coastal marine habitats used by juvenile salmon and associated epipelagic fishes, to understand how environmental variation affects the sustainability of these marine resources in an ecological context. The study of juvenile anadromous stocks of salmon in ocean ecosystems is an important component of the NPAFC 2006-2010 Science Plan. This component recommends studies directed at understanding: seasonal distribution and migration route/timing of juvenile salmon; hydrological characteristics, primary production, and prey resources in the habitats; trophic linkages, growth rates and predation rates of juvenile salmon; and population size, survival rate and survival mechanism of juvenile salmon. SECM research focuses on each of these elements of this component. In particular, SECM examines the relationships among habitat use, marine growth, hatchery and wild stock interactions, year-class strength, and ocean carrying capacity of key juvenile salmon stocks in the Eastern Pacific rim. Research under the GLOBEC program incorporates basin-scale studies to determine how plankton productivity and the carrying capacity for high-trophic level, pelagic carnivores in the North Pacific Ocean change in response to climate variations, and incorporates regional-scale ecosystem studies to compare how variations in ocean climate affect species dominance and fish populations in the coastal margins of the Pacific Rim. SECM research addresses the regional-scale component of the GLOBEC program by 1) collecting biological data on juvenile Pacific salmon and ecologically related fish species from surface rope trawl samples, 2) monitoring physical and biological oceanographic indices at sampling stations in marine habitats, and 3) conducting process studies focusing on bioenergetics, prey fields, and trophic relationships of juvenile salmon and associated fishes.

Since 1988, scientists at the Auke Bay Laboratories have been using the /Delta/ submarine for a wide range of research projects. Over 500 dives have been completed. The video collected during these projects provides valuable direct observations of seafloor habitat and biological attributes. This project is assembling a database that will include dive locations and basic biological and substrate information from each of the dives. To date, biological and substrate data have been processed for about 40% of the dives.

Four time-series data sets are from instruments on biophysical moorings at the established NOAA/PMEL data-collection site "M5" on the eastern Bering Sea Shelf. Mooring were deployed at the M5 site in the Fall of each year; in September in 2015, 2016 and 2017, and October in 2018. Contract Fishing Vessel Aquila was used for deployments in 2015, 2016 and 2018 (cruises AQ1501, AQ1601 and AQ1801, respectively). NOAA Ship Oscar Dyson was used for deployments in 2017 (cruise DY1708). Moorings and instruments were left over winter and recovered the following Fall. Biophysical subsurface mooring filenames, e.g. 15bs-5a, indicate year (15) area (bs) and defined location ("5" for M5). Instrumentation included SeaBird SBE-37 (Microcat), SBE-39, SBE 56 (temperature sensor) profilers and WetLabs EcoFluorometers. Data include temperature, conductivity, salinity, pressure, water depth, raw chlorophyll fluorescence and chlorophyll a. The cruise was funded by NOAA, Pacific Marine Environmental Laboratory EcoFOCI program and NOAA Arctic Research Program with additional support from AOOS, the NOAA-regional ocean data partnership. The Ecosystem and Fisheries-Oceanography Coordinated Investigations (EcoFOCI) program is a partnership with NOAA PMEL and NOAA Alaska Fisheries Science center (AFSC). Scientists from PMEL and the University of Washington cooperative institute (CICOES) collaborated in this data collection and related data processing and analysis. Deployment and recovery operations on this cruise were managed by EcoFOCI personnel from NOAA/PMEL, NOAA/AFSC and UW/CICOES. Mooring time series data were processed at NOAA/PMEL/EcoFOCI using standard techniques. Time is recorded as UTC. Data contacts: Phyllis Stabeno, Shaun Bell, Ryan McCabe, Peggy Sullivan. Data are in NetCDF. Longitudes are in degW.

The dataset contains trawl and seine catches from Southeast Alaskan estuaries sampled from 1995 to 2008. The data also include physical variables (temp, salinity, turbidity), and shorezone shoreline classifications.

Each year over 50 Alaskan groundfish stock assessments report the condition of Alaskan fisheries resources in the U.S. Exclusive Economic Zone. Stock assessment scientists integrate biological observations and theoretical considerations via population modeling techniques to produce population dynamic trends and biological yield estimation. This data set captures various stock assessment trends and estimations.

These data are part of a ocean observation study by Stabeno, Napp, and Whitledge sponsored, in part, by the North Pacific Research Board (Project 517; http://doc.nprb.org). The grant was titled "Sentinels for Bering Sea ecosystem change." Moorings have been maintained on the southeastern Bering Sea shelf at four sites: M2 (56.9B0N, 164.1B0W) since 1995, M4 (57.9B0N, 168.9B0W) since 1996; M5 (59.9B0N, 171.7B0W) and; M8 (62.2B0N 174.7B0W) since 2004. Shipboard measurements of temperature, salinity, nutrients, chlorophyll, fluorescence and zooplankton were collected around the moorings and along the 70-m isobath on 3 cruises (3MF05, 16 April b?? 7 May; 3TT05, May 12 - 28; 8MF05, 21 September b?? 4 October) to groundtruth the in situ sensors on the moorings. This long-term monitoring supports major findings: (1) Over the southeastern shelf, the timing of the spring phytoplankton bloom is determined by the presence of ice, with an early bloom occurring if ice is present after mid-March and a later bloom if there is no sea-ice after mid-March; (2) during 2001-2005, the southeastern Bering Sea shelf underwent a marked warming (~3B0C) that was closely associated with a decrease of sea ice; with shifts in the atmospheric forcing, colder conditions returned to the Bering Sea shelf in the winter 2006 and continued into winter/spring 2007; (3) nutrients supply and summer salinity over the shelf has not significantly changed during the last three decades; (4) in association with the warming there is an indication that the abundance of cold-water zooplankton species (e.g. Calanus marshallae ) has been reduced; (5) from hydrography collected in May and September 2005 along the 70 m isobath starting at M2 in the south and ending at M8 in the north, it is evident that the structure of southern shelf is dominated by temperature, while the northern shelf is dominated by salinity. In addition, the location of the boundary between the southern shelf and northern shelf appears to vary from one year to the next and is mainly, but not completely dependent upon maximum ice extent during the spring.

Members of the Alaska Fisheries Science Center's (AFSC) Stock Assessment and Multispecies Assessments Program are responsible for determining the condition of fisheries resources in the U.S. Exclusive Economic Zone using data collected by other AFSC scientists and developing strategies for managing those resources. Their research focuses on updating information on population dynamic trends, estimation of biological yields, and management strategies (as presented in annual assessment documents).

The Resource Assessment and Conservation Engineering Division (RACE) of the Alaska Fisheries Science Center (AFSC) conducts bottom trawl surveys to monitor the condition of the demersal fish and crab stocks of Alaska. These data include catch per unit effort for each commercially important crab species at a standard set of stations in the eastern Bering Sea. This is a subset of the main database. Excluded are certain non standard tows and other types of data collected other than species id, species size category, species catch per unit effort (number per square nautical mile), water temperature and depth.