Three marine mammal observers participated on a cetacean survey from 26 June to 15 July 2003, aboard the NOAA ship Miller Freeman as a piggyback project during a RACE acoustic-trawl survey for pollock (see RACE.s Midwater Assessment and Conservation Engineering report here: http://www.afsc.noaa.gov/Quarterly/jas2003/divrptsRACE2.htm). A total of 2,242 km of trackline were surveyed with 364 cetacean sightings (1,079 individuals). An additional 28 cetacean sightings were made (175 individuals) during off effort periods. Species included harbor porpoise, Dalls porpoise, Pacific white-sided dolphins, killer whales, minke whales, fin whales, humpback whales, sperm whales, Baird.s beaked whales, and Cuviers beaked whales. See link for details: http://www.afsc.noaa.gov/Quarterly/jas2003/divrptsNMML2.htm.

Aerial surveys were conducted to produce abundance estimates for the three Alaska stocks of harbor porpoise. Surveys occurred from May to July 1997 for the Southeast Alaska stock, May to July 1998 for the Gulf of Alaska stock, and June to July 1999 for the Bering Sea stock. Two primary observers observed from bubble windows on the left and right side of the plane. A belly window observer with a view directly down along the trackline collected sightings that were matched to the side observers and used to estimate a correction factor for perception bias that was specific to harbor porpoise in Alaskan waters.

Visual surveys for cetaceans were conducted on the eastern Bering Sea shelf along transect lines, in association with the AFSC.s echo integration trawl surveys for walleye pollock. Surveys in 2000 and 2004 were from early June to early July, the survey in 2002 was from early June to late July, and the survey in 1999 was from early July to early August. Searches for cetaceans were conducted from the flying bridge of the NOAA ship Miller Freeman at a platform height of 12 m above the sea surface and survey speed of 18.5 22.0 km/h (10 12 kts). North south transect lines were spaced 37 km apart and defined by the historical acoustic survey for walleye pollock. Insufficient funding precluded including cetacean observers on all legs except in 2002. See Friday et al. 2012. Cetacean distribution and abundance in relation to oceanographic domains on the eastern Bering Sea shelf: 1999-2004 (http://www.sciencedirect.com/science/article/pii/S0967064512000100).

As currently defined, the Southeast Alaska (SEAK) harbor porpoise (Phocoena phocoena) stock ranges from Dixon entrance to Cape Suckling, including inland waterways. Since the early 1990s, the Marine Mammal Laboratory (MML) has conducted ship and aerial surveys to assess abundance and status of harbor porpoise in this region (Dahlheim et al., 2009; Hobbs and Waite, 2010). In recent years, analysis of ship survey sighting data from inland waters has indicated the potential for substructure within this stock. Trends in abundance between 1991 and 2012 suggested that numbers of harbor porpoise in the northern portion of the study area (Glacier Bay/Icy Strait) were stable. However, in the southern portion of the range (Wrangell and Zarembo), numbers declined significantly in the mid-2000s and subsequently increased again in early 2010 (Dahlheim et al., 2015). The decline was observed only in a region where gillnet fisheries operate. Such contrasting trends in abundance between the northern and southern portions of the range suggest the possible existence of multiple populations within the currently recognized SEAK stock. There is evidence that incidental mortality of harbor porpoise in the salmon driftnet fishery in SEAK may exceed the maximum allowable level under the Marine Mammal Protection Act (MMPA) (Muto et al., 2018). The most recent estimate of abundance for the whole stock is more than 8 years old and cannot be used to estimate PBR. In addition, estimates of abundance from inland waters from 2011 are now outdated and are no longer applicable for management. Therefore, a new estimate was needed to update estimates of the maximum allowable bycatch levels.

In 1991, NMML initiated cetacean studies with vessel coverage throughout inland waters of Southeast Alaska. Between 1991 and 1993, line-transect methodology was used to: 1) obtain population estimates of both harbor porpoise and Dalls porpoise, 2) establish a baseline for detecting trends in porpoise abundance, and 3) define porpoise distributional patterns and seasonality. Three line-transect surveys were carried out each year spanning spring, summer, and fall. To update abundance and trends for both harbor porpoise and Dalls porpoise, NMML once again initiated line-transect surveys in 2006 (spring and summer), 2007 (spring, summer and fall), 2010 (summer and fall), 2011 (summer and fall), and 2012 (summer) using methods comparable to those used in the early 1990s.

The dataset contains trawl and seine catches from Southeast Alaskan estuaries sampled from 1995 to 2008. The data also include physical variables (temp, salinity, turbidity), and shorezone shoreline classifications.

The Southeast Alaska Coastal Monitoring (SECM) project in Alaska was initiated in 1997 by the Auke Bay Laboratory, National Marine Fisheries Service, to study the habitat use and early marine ecology of juvenile (age-0) Pacific salmon (Oncorhynchus spp.) and associated epipelagic ichthyofauna. This research has been conducted to meet several needs identified in the National Oceanic and Atmospheric Administration (NOAA) Fisheries 2006-2011 Strategic Plan, the North Pacific Anadromous Fisheries Commission (NPAFC) 20062010 Science Plan, and the Gulf of Alaska Global Ocean Ecosystem Dynamics (GLOBEC) Program. A primary goal of the 2006-2011 NOAA Fisheries Strategic Plan is to Protect, Restore, and Manage the Use of Coastal and Ocean Resources Through an Ecosystem Approach to Management. SECM research addresses the five fundamental activities identified under this goal, which include: Monitor and observe the land, sea, atmosphere. Understand and describe how natural systems work together, Assess and predict the changes in natural systems, Engage, advise, and inform individuals, partners, communities, and industries, and, Manage coastal and ocean resources SECM research emphasizes long-term monitoring of coastal marine habitats used by juvenile salmon and associated epipelagic fishes, to understand how environmental variation affects the sustainability of these marine resources in an ecological context. The study of juvenile anadromous stocks of salmon in ocean ecosystems is an important component of the NPAFC 2006-2010 Science Plan. This component recommends studies directed at understanding: seasonal distribution and migration route/timing of juvenile salmon; hydrological characteristics, primary production, and prey resources in the habitats; trophic linkages, growth rates and predation rates of juvenile salmon; and population size, survival rate and survival mechanism of juvenile salmon. SECM research focuses on each of these elements of this component. In particular, SECM examines the relationships among habitat use, marine growth, hatchery and wild stock interactions, year-class strength, and ocean carrying capacity of key juvenile salmon stocks in the Eastern Pacific rim. Research under the GLOBEC program incorporates basin-scale studies to determine how plankton productivity and the carrying capacity for high-trophic level, pelagic carnivores in the North Pacific Ocean change in response to climate variations, and incorporates regional-scale ecosystem studies to compare how variations in ocean climate affect species dominance and fish populations in the coastal margins of the Pacific Rim. SECM research addresses the regional-scale component of the GLOBEC program by 1) collecting biological data on juvenile Pacific salmon and ecologically related fish species from surface rope trawl samples, 2) monitoring physical and biological oceanographic indices at sampling stations in marine habitats, and 3) conducting process studies focusing on bioenergetics, prey fields, and trophic relationships of juvenile salmon and associated fishes.

Diel epipelagic sampling for juvenile Pacific salmon (Oncorhynchus spp.), rockfish (Sebastes spp.), sablefish (Anoplopoma fimbria), and associated species was conducted in order to identify factors that may affect year-class success of these commercially important species. Sampling occurred in offshore marine habitats of the coastal northeast Pacific Ocean from 10-20 August 2005 and was conducted with a surface trawl fishing the upper 20 m of the water column along transects up to78 km offshore near 58 N. Three habitats were sampled along each transect over a 24-hr period: the continental shelf (<200 m depth), the continental slope (400-750 m depth), and the abyss (>2,000 m depth). A total of 38,747 fish and squid representing 24 species were sampled in 56 trawl hauls. Of the targeted juvenile fish species, a total of 587 salmon, 11 rockfish, and 70 sablefish were captured. Sampling during day (1500-1900) and night (2200-0200) periods indicated that biomass of fish and squid was 2-4 times higher at night at (each?)all habitat types pooled across transects. No distinct patterns between day or night occurrence were noted for juvenile pink salmon (O. gorbuscha), chum salmon (O. keta), sockeye salmon (O. nerka), or coho salmon (O. kisutch), however, juvenile Chinook salmon (O. tshawytscha) were encountered only at night. Catches of juvenile rockfish and juvenile sablefish were quite low in this study, and larger sample sizes of these fish are needed to adequately determine their diel distribution. Diel differences were apparent with forage species such as Pacific herring (Clupea pallasi), capelin (Mallotus villosus), and eulachon (Thaleichthys pacificus) that were almost exclusively sampled at night. The offshore distribution patterns of target species were distinctly different, with the most common occurrences of juvenile salmon over continental shelf habitats, juvenile sablefish over continental shelf and slope habitats, and juvenile rockfish over slope and abyss habitats. Pacific herring, capelin, eulachon, and Pacific sardines (Sardinops sagax) were found over continental shelf habitats, whereas small squid and myctophids occurred primarily at slope and abyssal habitats. The greatest overall catch biomass was of gelatinous species (jellyfish), which was consistently higher than that of all fish and squid combined, usually by an order of magnitude. Individual fish or squid species with highest average weight per haul were pomfret (Brama japonica), adult coho salmon, Humboldt squid (Dosidicus gigas), and blue sharks (Prionace glauca). The occurrence of the latter two warm-water species and Pacific sardines were of interest because this study occurred during an anomalously warm year and the capture of Pacific sardines and Humboldt squid represent northern range extensions for these species. Stomach content analysis of potential predator species of the target species showed that only adult coho salmon were predating on juvenile salmon and sablefish, and only pomfret were predating on juvenile rockfish. Further sampling of the target species is needed in these habitats during more normal environmental conditions to validate these observations.

This dataset is a compilation of line-transect data collected on surveys in the Aleutian Islands, Bering Sea, and western and central Gulf of Alaska, 2001 - 2010. All the surveys were conducted with similar methods using line-transect protocols, allowing effort to be quantified, but there were differences in transect design in some years (some surveys were systematic, some were not). Sighting information for all cetacean and at-sea pinniped species was collected. The database was compiled with the intent of including all surveys with sighting data on killer whales, in order to assess killer whale population biology in this region. Surveys included in this database are 2001 - 2007, 2009 and 2010 NMML killer whale surveys.

Visual surveys for cetaceans were conducted on the eastern Bering Sea shelf along transect lines, in association with the AFSC’s echo integration trawl surveys for walleye pollock. Surveys in 2000 and 2004 were from early June to early July, the survey in 2002 was from early June to late July, and the survey in 1999 was from early July to early August. Searches for cetaceans were conducted from the flying bridge of NOAA Ship Miller Freeman at a platform height of 12 m above the sea surface and survey speed of 18.5 22.0 km/h (10 12 kts). North south transect lines were spaced 37 km apart and defined by the historical acoustic survey for walleye pollock. Insufficient funding precluded including cetacean observers on all legs except in 2002. See Friday et al. 2012. Cetacean distribution and abundance in relation to oceanographic domains on the eastern Bering Sea shelf: 1999-2004 (http://www.sciencedirect.com/science/article/pii/S0967064512000100).