The cruise began when the ship departed Dutch Harbor on October 1, 2011 at 1500 ADT. Sampling commenced at collection site 1E, which corresponds to Station 1. Station number reflects the order of site occupation (see Cruise Report Table 1, Figures 1 and 2). All but one of the Semidi grid sites were successfully occupied by 10 October. Site 2B was not occupied successfully because the midwater trawl was torn by bottom contact and we chose to forgo sampling there in favor of running to the next station while the deck crew removed the tangled trawl from the net reel. Unfortunately, removing the net took about 12 hrs because the net became tangled on the reel. Only 17 of the 32 Kodiak grid sites were successfully occupied (Table 1). This was largely due to an overly ambitious cruise plan. Overall, samples were successfully collected to address cruise objectives (no. sites, gear type): time series (n=26 sites, midwater Stauffer trawl), resource selection models (RSM, n=35 sites, 3-m plumb staff beam trawl), potential prey (n=9 sites, 60-cm bongo, epibenthic sled, Van Veen grab infauna), and juvenile fish production (relevant data were collected at all sites). At nine sites, including Station 39, the sea floor was too rough to sample on bottom so only a midwater sample was collected. This additional sampling was to supplement collections made for the GOA-Integrated Ecosystem Research Program (RHeintz, see above Samples Collected) and for a study of otolith element composition. Sampling concluded after three unsuccessful attempts to obtain a sediment composition sample at Site 27G (Station 56) at approximately 03:25 on 14 October 2011.

The trawl database contains multiple tables of data. The ‘haul’ table contains the location, date, time and depth of the trawl haul. The ‘catch’ table contains the numbers and weights of the taxa in each haul. The ‘length’ table contains the lengths of selected taxa in each haul. There is data for the eastern Bering Sea for 2008, 2010, 2012, and 2014. There is Gulf of Alaska trawl data from 1993 to 2015.

This database contains information about shrimp surveys conducted by the National Marine Fisheries Service and the Alaska Department of Fish and Game in the Gulf of Alaska, Bering Sea and Aleutian Islands dating back to 1953. The main tables used for analysis are the shrimp.catch, shrimp.length, shrimp.cruise, and shrimp.haul tables. Join columns provide linkages between the tables.The shrimp.catch table contains catch weights and counts by haul. Not all catch weights have associated counts and in the earlier years of the time series the catch of all species was not recorded so care must be taken that a non-recorded catch is not interpretated as a zero catch. The shrimp.length table contains the length measurements of the shrimp and other taxa taken during the smallmesh survey.The Shrimp.cruise table contains information on each of the individual surveys called cruises included in the smallmesh database from the Bering Sea, Gulf of Alaska, and Aleutian Islands. The definition of a cruise has not been consistent over the years. Generally, a cruise is conducted by a single vessel in a single geographic area. For certain cruises however, multiple vessels participated in hauls ranging from the Bering Sea to the Gulf of Alaska. The records from some cruises contain as few as one haul while several consist of over 500 hauls. The Shrimp.haul table contains the basic information gathered for each haul including location, date and time, and gear information. Some of the hauls in the data set are from surveys not necessarily targeting shrimp, mainly the hauls in the Bering Sea and Aleutian Islands.

The scientific objective of the Gulf of Alaska Survey (GOA Survey) is to assess Young of the Year (YOY) groundfish, salmon, plankton, and oceanographic conditions across the coastal, shelf, slope, and offshore waters of the GOA and to provide information on species distribution, ecosystem structure, and marine productivity in response to changes in season, region, and climate. Specific objectives are to 1) observe epi-pelagic fish communities by sampling with a rope trawl towed at the surface; 2) collect electronic oceanographic data including CTD (Conductivity-temperature-depth) vertical profiles of temperature, salinity, light transmission, chlorophyll a fluorescence, and photosynthetic available radiation (PAR); and 3) collect biological oceanographic samples (zooplankton and water) by oblique bongo tows and water sampling.

We studied young of the year sablefish Anoplopoma fimbria to collect basic life history information on their abundance, growth, and diet and to determine whether forecasting year class abundance based on young of the year surveys was practical. Surface gillnet surveys were conducted annually from 1995 to 2004 along the seaward edge of the continental shelf of Alaska. Otoliths were extracted from a random subset of juvenile sablefish sampled by gillnet. This data set includes voucher otoliths from these studies.

This data set was used to explore advanced technologies using Fourier transform near infrared (FT-NIR) spectroscopy coupled with machine learning to estimate fish age more rapidly and with greater efficiency than traditional approaches.The data set integrates two key data modalities that are related to fish ages: the entire range of wavenumbers of FT-NIR spectra and corresponding biological and geospatial data for a total of 2613 northern rockfish (Sebastes polyspinis) specimens.

Diel epipelagic sampling for juvenile Pacific salmon (Oncorhynchus spp.), rockfish (Sebastes spp.), sablefish (Anoplopoma fimbria), and associated species was conducted in order to identify factors that may affect year-class success of these commercially important species. Sampling occurred in offshore marine habitats of the coastal northeast Pacific Ocean from 10-20 August 2005 and was conducted with a surface trawl fishing the upper 20 m of the water column along transects up to78 km offshore near 58 N. Three habitats were sampled along each transect over a 24-hr period: the continental shelf (<200 m depth), the continental slope (400-750 m depth), and the abyss (>2,000 m depth). A total of 38,747 fish and squid representing 24 species were sampled in 56 trawl hauls. Of the targeted juvenile fish species, a total of 587 salmon, 11 rockfish, and 70 sablefish were captured. Sampling during day (1500-1900) and night (2200-0200) periods indicated that biomass of fish and squid was 2-4 times higher at night at (each?)all habitat types pooled across transects. No distinct patterns between day or night occurrence were noted for juvenile pink salmon (O. gorbuscha), chum salmon (O. keta), sockeye salmon (O. nerka), or coho salmon (O. kisutch), however, juvenile Chinook salmon (O. tshawytscha) were encountered only at night. Catches of juvenile rockfish and juvenile sablefish were quite low in this study, and larger sample sizes of these fish are needed to adequately determine their diel distribution. Diel differences were apparent with forage species such as Pacific herring (Clupea pallasi), capelin (Mallotus villosus), and eulachon (Thaleichthys pacificus) that were almost exclusively sampled at night. The offshore distribution patterns of target species were distinctly different, with the most common occurrences of juvenile salmon over continental shelf habitats, juvenile sablefish over continental shelf and slope habitats, and juvenile rockfish over slope and abyss habitats. Pacific herring, capelin, eulachon, and Pacific sardines (Sardinops sagax) were found over continental shelf habitats, whereas small squid and myctophids occurred primarily at slope and abyssal habitats. The greatest overall catch biomass was of gelatinous species (jellyfish), which was consistently higher than that of all fish and squid combined, usually by an order of magnitude. Individual fish or squid species with highest average weight per haul were pomfret (Brama japonica), adult coho salmon, Humboldt squid (Dosidicus gigas), and blue sharks (Prionace glauca). The occurrence of the latter two warm-water species and Pacific sardines were of interest because this study occurred during an anomalously warm year and the capture of Pacific sardines and Humboldt squid represent northern range extensions for these species. Stomach content analysis of potential predator species of the target species showed that only adult coho salmon were predating on juvenile salmon and sablefish, and only pomfret were predating on juvenile rockfish. Further sampling of the target species is needed in these habitats during more normal environmental conditions to validate these observations.

Data collected on this cruise included the following: We conducted a juvenile fish and benthic fish prey survery in the eastern Bering Sea (61 3-meter beam trawls, 64 modified tucker epibenthic plankton sled tows, 54 van veen benthic grab collections).

A time series of scale samples (1956 2002) collected from adult sockeye salmon returning to Naknek River were retrieved from the Alaska Department of Fish and Game. These scales were digitized, revealing growth information for the freshwater and marine life history stages of sockeye salmon. The growth information will be related to time series of sockeye salmon production to Bristol Bay and oceanographic conditions within the Bering Sea and North Pacific Ocean.

Data are currently limited or lacking for several federally managed rockfish species of the genus Sebastes found within the Gulf of Alaska. This project is related to the core mission of the Alaska Fisheries Science Center as it will provide data which will refine and improve assessment models for these commercially important species. The initial data collection from this project began in 2009 and is on-going. Samples of a variety of rockfish species have been collected from several years and in several locations throughout the Gulf of Alaska. These data are stored in database files (MS Excel or MS Access).