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BBGD: an Online Database for Blueberry Genomic Data
,NOTE: This dataset is no longer publicly available.,BBGD (http://bioinformatics.towson.edu/BBGD/) was developed as a database for blueberry genomics. BBGD is both a sequence and gene expression database. It stores both EST and microarray data and allows scientists to correlate expression profiles with gene function. BBGD is a public online database. "Presently, the main focus of the database is the identification of genes in blueberry that are significantly induced or suppressed after low temperature exposure. ",To gain a better understanding of changes in gene expression associated with cold acclimation in blueberry, the Rowland laboratory (USDA-ARS, Beltsville, MD) has undertaken a genomics approach based on the analysis of Expressed Sequence Tags (ESTs). Initially, two standard cDNA libraries were constructed using RNA from cold-acclimated and non-acclimated floral buds of the blueberry cultivar ‘Bluecrop’ (Vaccinium corymbosum L.) and about 1200 5’-end ESTs were generated from each of the libraries. About 100 3’-end ESTs were generated from the cold-acclimated library as well.,The Blueberry EST database contains EST sequences from a number blueberry libraries including cold acclimated and non-acclimated libraries. It also includes forward and reverse subtractive libraries.,You can query the sequence database by clone ID, accession number or gene (clone) name below. Or you can get a list (in tabular) format of all the clones in a particular library by clicking on the library name on the left side navigation bar.,Attribution for photo: D2601-1 - Blueberry plant: Copyright free, public domain photo by Mark Ehlenfeldt,
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Database of Genotype and Phenotype (dbGaP)
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Database of Genotype and Phenotype (dbGaP) was developed to archive and distribute the data and results from studies that have investigated the interaction of genotype and phenotype in Humans.
RefSeq: NCBI Reference Sequence Database
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A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
USDA Public Citrus Genome Database
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,This is a public resource highlighting efforts at ARS in developing genome information for the Citrus Carrizo Genome. Updates and progress are reported here.,,
대덕넷 - BT분야출연연구소별과제데이터
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과학기술 BT(Biotechnology) 분야 정부출연연구소별 정부 R&D 과제 데이터입니다.
NCBI Datasets
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NCBI Datasets is one-stop shop for finding, browsing, and downloading genomic data. Find and download taxonomy, genome, gene, transcript, protein data, including installation of NCBI Datasets command-line tools.
SoyBase and the Soybean Breeder's Toolbox
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,SoyBase is a repository for genetics, genomics and related data resources for soybean. It contains current genetic, physical and genomic sequence maps integrated with qualitative and quantitative traits.,SoyBase database was established in the 1990s as the USDA Soybean Genetics Database. Originally, it contained only genetic information about soybeans such as genetic maps and information about the Mendelian genetics of soybean. In time SoyBase was expanded to include molecular data regarding soybean genes and sequences as they became available. In 2010, the soybean genome sequence was published and it and supporting gene sequences have been integrated into the SoyBase sequence browser. SoyBase genetic maps were used in the assembly of both the Williams 82 2010 assembly (Wm82.a1.v1) and the newest genome assembly (Wm82.a2.v1).,SoyBase also incorporates information about mutant and other soybean genetic stocks and serves as a contact point for ordering strains from those populations. As association analyses continue due to various re-sequencing efforts SoyBase will also incorporate those data into the soybean genome browser as they become available. Gene expression patterns are also available at SoyBase through the SoyBase expression pages and the Soybean Gene Atlas. Other expression/transcriptome/methylomic data sets also have been and continue to be incorporated into the SoyBase genome browser.,Project No:3625-21000-062-00D Accession No: 0425040,
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과학기술 BT(Biotechnology) 분야 중소기업별 정부 R&D 과제 데이터입니다.