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Environmental mixtures and breast cancer: identifying co-exposure patterns between understudied vs breast cancer-associated chemicals using chemical inventory informatics
All data used for these analyses are publicly available, either through CPDat, ToxRefDB, or the CompTox Chemicals Dashboard. Script associated with these analyses are publicly available through the Ragerlab Github repository. Data that were combined and analyzed in generating results for this specific study are provided as supplemental material (Supplementary Tables 1–10, provided online through the Ragerlab-Dataverse repository). This dataset is associated with the following publication: Koval, L., K. Dionisio, K. Friedman, K. Isaacs, and J. Rager. Environmental mixtures and breast cancer: identifying co-exposure patterns between understudied vs breast cancer-associated chemicals using chemical inventory informatics. Journal of Exposure Science and Environmental Epidemiology. Nature Publishing Group, London, UK, 32: 794-807, (2022).
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Datasets associated with "Mining of Consumer Product and Purchasing Data to Identify Potential Chemical Co-exposures"
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Background: Chemicals in consumer products are a major contributor to human chemical co-exposures. Consumers purchase and use a wide variety of products containing potentially thousands of chemicals. There is a need to identify potential real-world chemical co-exposures in order to prioritize in vitro toxicity screening. However, due to the vast number of potential chemical combinations, this has been a major challenge. Objectives: We aim to develop and implement a data-driven procedure for identifying prevalent chemical combinations to which humans are exposed through purchase and use of consumer products. Methods: We applied frequent itemset mining on an integrated dataset linking consumer product chemical ingredient data with product purchasing data from sixty thousand households to identify chemical combinations resulting from co-use of consumer products. Results: We identified co-occurrence patterns of chemicals over all households as well as those specific to demographic groups based on race/ethnicity, income, education, and family composition. We also identified chemicals with the highest potential for aggregate exposure by identifying chemicals occurring in multiple products used by the same household. Lastly, a case study of chemicals active in estrogen and androgen receptor in silico models revealed priority chemical combinations co-targeting receptors involved in important biological signaling pathways. Discussion: Integration and comprehensive analysis of household purchasing data and product-chemical information provided a means to assess human near-field exposure and inform selection of chemical combinations for high-throughput screening in in vitro assays. This dataset is associated with the following publication: Stanfield, Z., C. Addington, K. Dionisio, D. Lyons, R. Tornero-Velez, K. Phillips, T. Buckley, and K. Isaacs. Mining of consumer product and purchasing data to identify potential chemical co-exposures.. ENVIRONMENTAL HEALTH PERSPECTIVES. National Institute of Environmental Health Sciences (NIEHS), Research Triangle Park, NC, USA, 129(6): N/A, (2021).
Datasets associated with "Mining of Consumer Product and Purchasing Data to Identify Potential Chemical Co-exposures"
공공데이터포털
Background: Chemicals in consumer products are a major contributor to human chemical co-exposures. Consumers purchase and use a wide variety of products containing potentially thousands of chemicals. There is a need to identify potential real-world chemical co-exposures in order to prioritize in vitro toxicity screening. However, due to the vast number of potential chemical combinations, this has been a major challenge. Objectives: We aim to develop and implement a data-driven procedure for identifying prevalent chemical combinations to which humans are exposed through purchase and use of consumer products. Methods: We applied frequent itemset mining on an integrated dataset linking consumer product chemical ingredient data with product purchasing data from sixty thousand households to identify chemical combinations resulting from co-use of consumer products. Results: We identified co-occurrence patterns of chemicals over all households as well as those specific to demographic groups based on race/ethnicity, income, education, and family composition. We also identified chemicals with the highest potential for aggregate exposure by identifying chemicals occurring in multiple products used by the same household. Lastly, a case study of chemicals active in estrogen and androgen receptor in silico models revealed priority chemical combinations co-targeting receptors involved in important biological signaling pathways. Discussion: Integration and comprehensive analysis of household purchasing data and product-chemical information provided a means to assess human near-field exposure and inform selection of chemical combinations for high-throughput screening in in vitro assays. This dataset is associated with the following publication: Stanfield, Z., C. Addington, K. Dionisio, D. Lyons, R. Tornero-Velez, K. Phillips, T. Buckley, and K. Isaacs. Mining of consumer product and purchasing data to identify potential chemical co-exposures.. ENVIRONMENTAL HEALTH PERSPECTIVES. National Institute of Environmental Health Sciences (NIEHS), Research Triangle Park, NC, USA, 129(6): N/A, (2021).
Inorganic and organic concentration data collected from 38 streams in the United States, 2012-2014, with supporting data, as part of the Chemical Mixtures and Environmental Effects Pilot Study.
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This USGS data release contains station and laboratory method information and geospatial information, as well as concentration results for inorganic and organic compounds and bioluminescent yeast estrogen screen and transgenic zebrafish embryo estrogren bioassay, analyzed at 38 sites in 25 states as part of the Chemical Mixtures and Environmental Effects Pilot Study, 2012-2014.
Inorganic and organic concentration data collected from 38 streams in the United States, 2012-2014, with supporting data, as part of the Chemical Mixtures and Environmental Effects Pilot Study.
공공데이터포털
This USGS data release contains station and laboratory method information and geospatial information, as well as concentration results for inorganic and organic compounds and bioluminescent yeast estrogen screen and transgenic zebrafish embryo estrogren bioassay, analyzed at 38 sites in 25 states as part of the Chemical Mixtures and Environmental Effects Pilot Study, 2012-2014.
Chemical-Gene and Chemical-Pathway Interactions Predicted for Chemicals Detected in the USGS-USEPA National Streams Pilot Study Based on Effects Data in the Comparative Toxicogenomics Database (CTD)
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Data from study assessing the utility of knowledgebase-leveraging of comprehensive environmental-contaminant-exposure datasets by comparing biological effects predicted on the basis of target chemical analyses with measured biological effects in corresponding split water samples.
The CompTox Chemistry Dashboard: a community data resource for environmental chemistry
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The contents of the chemistry database, presently containing ~ 760,000 substances, are available as public domain data for download. The chemistry content underpinning the Dashboard has been aggregated over the past 15 years by both manual and auto-curation techniques within EPA’s DSSTox project.These data include physicochemical, environmental fate and transport, exposure, usage, in vivo toxicity, and in vitro bioassay data, surfaced through an integration hub with link-outs to additional EPA data and public domain online resources. This dataset is associated with the following publication: Williams, A., C. Grulke, J. Edwards, A. McEachran, K. Mansouri, N. Baker, G. Patlewicz, I. Shah, J. Wambaugh, R. Judson, and A. Richard. (Journal of Cheminformatics) The CompTox Chemistry Dashboard - A Community Data Resource for Environmental Chemistry. Journal of Cheminformatics. Springer, New York, NY, USA, 9(61): 1-27, (2017).
The CompTox Chemistry Dashboard: a community data resource for environmental chemistry
공공데이터포털
The contents of the chemistry database, presently containing ~ 760,000 substances, are available as public domain data for download. The chemistry content underpinning the Dashboard has been aggregated over the past 15 years by both manual and auto-curation techniques within EPA’s DSSTox project.These data include physicochemical, environmental fate and transport, exposure, usage, in vivo toxicity, and in vitro bioassay data, surfaced through an integration hub with link-outs to additional EPA data and public domain online resources. This dataset is associated with the following publication: Williams, A., C. Grulke, J. Edwards, A. McEachran, K. Mansouri, N. Baker, G. Patlewicz, I. Shah, J. Wambaugh, R. Judson, and A. Richard. (Journal of Cheminformatics) The CompTox Chemistry Dashboard - A Community Data Resource for Environmental Chemistry. Journal of Cheminformatics. Springer, New York, NY, USA, 9(61): 1-27, (2017).
Supporting data for Suen et al A-0zpd
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Tables, Figures, and Supplemental Materials for doi: 10.1158/1541-7786.MCR-16-0084. This dataset is associated with the following publication: Suen, A., W. Jefferson, C. Wood, E. Padilla-Banks, V. Bae-Jump, and C. Williams. SIX1 Oncoprotein as a Biomarker in a Model of Hormonal Carcinogenesis and in Human Endometrial Cancer.. Molecular Cancer Research. American Association for Cancer Research, Inc., Philadelphia, PA, USA, 14(9): 849-858, (2016).
Supporting data for Suen et al A-0zpd
공공데이터포털
Tables, Figures, and Supplemental Materials for doi: 10.1158/1541-7786.MCR-16-0084. This dataset is associated with the following publication: Suen, A., W. Jefferson, C. Wood, E. Padilla-Banks, V. Bae-Jump, and C. Williams. SIX1 Oncoprotein as a Biomarker in a Model of Hormonal Carcinogenesis and in Human Endometrial Cancer.. Molecular Cancer Research. American Association for Cancer Research, Inc., Philadelphia, PA, USA, 14(9): 849-858, (2016).
그린에코스 - 생활화학제품노출정보
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생활화학제품 사용시 흡입, 피부접촉, 음용을 통해 화학물질에 노출될 수 있는 양에 대하여 경로별 시나리오를 가정하고 표준노출계수와 사용량 정보 등을 이용하여 노출량을 계산하여 제공합니다. 사용자가 주어진 조건에서의 계산된 노출량 값을 보고 그와 유사한 조건에서의 노출량을 추정하는데 도움을 주며, 기타 노출량 결과값과 비교해 볼 수 있습니다.