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AFSC/ABL: Genetic data for juvenile chum salmon samples collected in the eastern Bering Sea on the U.S. BASIS cruises during 2003-2007.
Chum salmon (Oncorhynchus keta) are an important natural resource in western Alaska for subsistence, commercial and cultural reasons. Declines in chum salmon returns in some western Alaska drainages over the last couple of decades have prompted regulatory changes and bolstered research on this species in this region. Since 2002, juvenile chum salmon have been collected as part of the annual U.S. Bering-Aleutian Salmon International Survey (BASIS) during the late summer/fall season in the eastern Bering Sea. From the 2003-2007 collections, nearly 5,000 juvenile chum salmon samples were genetically analyzed. With the available microsatellite baseline, regional stock estimates were produced from mixed-stock analyses. The proportions of juvenile chum salmon from four western Alaska regionsNorton Sound, lower Yukon (summer-run), upper Yukon (fall-run), and Kuskokwim/northeastern Bristol Baywere remarkably similar across years during early marine residence, especially given the latitudinal shifts from year-to-year in the distribution across the eastern Bering Sea shelf of this highly migratory species. Most of the juvenile chum salmon were from the Yukon River, which has two life-history types, an earlier and typically more abundant summer run, and a later fall run. The Kuskokwim/northeastern Bristol Bay contribution within the study area (lat. 58-63N) was negligible, indicating that these stocks do not migrate northward during their first summer. The Norton Sound group contribution varied annually, but in general, increased with latitude. These results support a migration model whereby western Alaska juvenile chum salmon, after leaving freshwater, head primarily west and south across the eastern Bering Sea shelf. A relative abundance index was developed from the proportions of the two life-history types in the Yukon River of juvenile chum salmon in the survey area. In all five years of collections, the summer-run contribution was higher than the fall-run contribution in the juvenile chum salmon samples. The proportions of the two life-history types in the juvenile chum salmon collected at sea were compared with those in the Yukon River adult returns. A correlation was found between the juveniles and subsequent adult returns. This suggests that it is during the period of freshwater and early marine residence that the cohort strength of Yukon River summer- and fall-run chum salmon is determined.
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AFSC/ABL: 2009 Chum Salmon Bycatch Sample Analysis Bering Sea
공공데이터포털
A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch of the 2009 Bering Sea walleye pollock (Theragra chalcogramma) trawl fishery was undertaken to determine the overall stock composition of the sample set. Samples were genotyped for eleven microsatellite markers and results were estimated using the current chum salmon microsatellite baseline. In 2009, genetic samples were collected opportunistically as part of a special project, but sample biases have the potential to affect stock composition analysis results. Consequently, stock composition estimates apply to the sample set and may not represent the entire chum salmon bycatch. Based on the analysis of 1,437 chum salmon bycatch samples collected throughout the 2009 Bering Sea trawl fishery, North Asian (30%), East Asian (34%), and Eastern Gulf of Alaska/Pacific Northwest (18%) stocks dominated the sample set, with smaller contributions from Western Alaska (13%), Upper/Middle Yukon River (2%), and Southwest Alaska (4%) stocks. The estimates for the 2009 chum salmon bycatch sample set were similar to the 2005 chum salmon bycatch estimates.
AFSC/ABL: 2011 Chum Salmon Bycatch Sample Analysis Bering Sea
공공데이터포털
A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch from the 2011 Bering Sea walleye pollock (Theragra chalcogramma) trawl fishery was undertaken to determine the overall stock composition of the sample set. Samples were genotyped for 11 microsatellite markers and results were estimated using the current chum salmon microsatellite baseline. In 2011, genetic samples were collected systematically as part of a special project to reduce sample biases that exist in collections from previous years that have the potential to affect stock composition analysis results. One genetic sample was collected for every 31.1 chum salmon caught in 97% of the midwater trawl fishery that was sampled. Evaluation of sampling based on time, location, and vessel indicated that the genetic samples were representative of the total bycatch. Based on the analysis of 1,472 chum salmon bycatch samples collected throughout the 2011 Bering Sea trawl fishery, the Eastern Gulf of Alaska (GOA)/Pacific Northwest (PNW) stocks dominated the sample set (38%), with moderate contributions from East Asian (17%), North Asian (18%), and Western Alaska (16%) stocks, and smaller contributions from Upper/Middle Yukon River (9%) stocks. The estimates for the 2011 chum salmon bycatch sample set differed from the 20052010 estimates, indicating a change in the consistency of the regional stock contributions across the previous 6 years, possibly due to the larger proportion of bycatch caught later in the season and in the more southeastern NMFS reporting areas in 2011. There were significant spatial differences in stock distribution, with the Asian stocks dominating the central Bering Sea area and the Eastern GOA/PNW stocks dominating the southeastern Bering Sea. Analysis of temporal groupings revealed changes in stock composition during the course of the season with decreasing contribution of East Asia and Upper/Middle Yukon stocks and increasing contribution of Eastern GOA/PNW stocks over time.
AFSC/ABL: 2007 Chum Salmon Bycatch Sample Analysis Bering Sea
공공데이터포털
A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch of the 2007 Bering Sea walleye pollock (Theragra chalcogramma) trawl fishery was undertaken to determine the overall stock composition of the sample set. Samples were genotyped for eleven microsatellite markers and results were estimated using the current chum salmon microsatellite baseline. In 2007, genetic samples were collected opportunistically as part of a special project, but sample biases have the potential to affect stock composition analysis results. Consequently, stock composition estimates apply to the sample set and may not represent the entire chum salmon bycatch. Based on the analysis of 1,279 chum salmon bycatch samples collected throughout the 2007 Bering Sea trawl fishery, North Asian (35%), East Asian (34%), and Eastern Gulf of Alaska/Pacific Northwest (16%) stocks dominated the sample set, with smaller contributions from Western Alaska (10%) and Upper/Middle Yukon River (5%) stocks. The estimates for the 2007 chum salmon bycatch sample set were similar to the 2005, 2006, and 2009 chum salmon bycatch estimates, suggesting consistency of the regional stock contributions across years. Analysis of temporal groupings within the groundfish B season revealed changes in stock composition during the course of the season with decreasing contribution of Upper/Middle Yukon stocks over time, but leaves unanswered whether these changes are due to temporal or spatial differences in the sample set.
AFSC/ABL: 2006 Chum Salmon Bycatch Sample Analysis Bering Sea
공공데이터포털
A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch of the 2006 Bering Sea walleye pollock (Theragra chalcogramma) trawl fishery was undertaken to determine the overall stock composition of the sample set. Samples were genotyped for eleven microsatellite markers and results were estimated using the current chum salmon microsatellite baseline. In 2006, genetic samples were collected opportunistically as part of a special project, but sample biases have the potential to affect stock composition analysis results. Consequently, stock composition estimates apply to the sample set and may not represent the entire chum salmon bycatch. Based on the analysis of 1,367 chum salmon bycatch samples collected throughout the 2006 Bering Sea trawl fishery, North Asian (31%), East Asian (29%), and Pacific Northwest (25%) stocks dominated the sample set with smaller contributions from Western Alaska (8%) and Upper/Middle Yukon River (6%) stocks. The estimates for the 2006 chum salmon bycatch sample set were similar to the 2005 and 2009 chum salmon bycatch estimates, suggesting consistency of the regional stock contributions across years. Analysis of temporal groupings within the groundfish B season revealed changes in stock composition during the course of the season with decreasing contribution of Upper/Middle Yukon stocks over time, but leaves unanswered whether these changes are due to temporal or spatial differences in the sample set.
AFSC/ABL: Chum salmon bycatch genetic stock identification 1994-1995 Bering Sea
공공데이터포털
In some years, the Bering Sea trawl fishery incidentally harvests (bycatch) large numbers of chum salmon. Because chum salmon were declining in some western Alaska areas, the origins of the chum salmon bycatch were important. Tagging studies have shown that chum salmon originating in Asia and North America migrate through the eastern Bering Sea. Genetic stock identification (GSI), a method of estimating stock composition in mixed-stock fisheries, has helped in evaluating stock contributions to salmon fisheries on the western coast of North America. Through cooperative efforts between state and federal agencies, a comprehensive genetic baseline for Pacific Rim chum salmon stocks has been developed, which enables GSI in fisheries such as the Bering Sea trawl fishery. In 1994, the National Marine Fisheries Service, Auke Bay Laboratory, initiated a feasibility study of GSI in determining the origins of the chum salmon bycatch in the Bering Sea trawl fishery. Sampling in 1995 was intensified and resulted in samples covering the entire fishing season, representing nearly 11% of the total chum salmon bycatch. Estimates for our 1994 fishery samples over three period were 39-55% Asian stocks, 20-35% western Alaska stocks, and 21-29% southeastern Alaska, British Columbia, or Washington stocks. One small sample (N=47) of maturing fish showed a surprisingly large contribution of British Columbia stocks (53%). Estimates for our 1995 samples over seven time periods were 13-51% Asian stocks, 33-53% western Alaska stocks, and 9-46% southeastern Alaska, British Columbia, or Washington stocks. As in 1994, the sample of maturing fish (N=277) showed a large contribution of British Columbia stocks (49%) and Washington stocks (25%).
AFSC/ABL: 2005 Chum Salmon Bycatch Sample Analysis Bering Sea
공공데이터포털
A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch of the 2005 Bering Sea walleye pollock (Theragra chalcogramma) trawl fishery was undertaken to determine the overall stock composition of the sample set. Samples were genotyped for eleven microsatellite markers and results were estimated using the current chum salmon microsatellite baseline. In 2005, genetic samples were collected opportunistically as part of a special project and supplemented with archived scales from the Observer Program. Sample biases have the potential to affect stock composition analysis results; consequently, stock composition estimates apply to the sample set and may not represent the entire chum salmon bycatch. Based on the analysis of 1,084 chum salmon bycatch samples collected throughout the 2005 Bering Sea trawl fishery, East Asian (29%), North Asian (29%), Pacific Northwest (19%) and Western Alaska (16%) stocks dominated the sample set with smaller contributions from Southwest Alaska (<2%) and the Upper/Middle Yukon River (5%) stocks. The estimates for the 2005 chum salmon bycatch sample set were similar to the 1994-1995 chum salmon bycatch estimates, suggesting consistency of the regional stock contributions across years. Analysis of temporal groupings within the groundfish B season revealed changes in stock composition during the course of the season. Whether the decreasing proportional contributions of Western Alaska and Upper/Middle Yukon stocks and increasing proportional contributions from Asia over time are due to temporal or spatial differences in the sample set are unknown.
AFSC/ABL: 2012 Chum Salmon Bycatch Sample Analysis Bering Sea
공공데이터포털
A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch from the 2012 Bering Sea walleye pollock (Gadus chalcogrammus) trawl fishery was undertaken to determine the overall stock composition of the sample set. A genetic analysis of chum salmon collected during a test of a salmon excluder device was also conducted. Samples were genotyped for 11 microsatellite markers and results were estimated using the current chum salmon microsatellite baseline. In 2012, genetic samples were collected systematically as part of a special project that commenced in 2011 to reduce sample biases that exist in collections from previous years and have the potential to affect stock composition analysis results. One genetic sample was collected for every 31.5 chum salmon caught in the 98% of the midwater trawl fishery that was sampled. Evaluation of sampling based on time, location, and vessel indicated that the genetic samples were representative of the total bycatch. Based on the analysis of 673 chum salmon bycatch samples collected throughout the 2012 Bering Sea trawl fishery, the North Asian stocks dominated the sample set (39%), with moderate contributions from East Asian (20%), Eastern Gulf of Alaska (GOA)/Pacific Northwest (PNW) (18%), and Western Alaska (14%) stocks, and smaller contributions from Upper/Middle Yukon River (7%) and Southwest Alaska (2%) stocks. The estimates for the 2012 chum salmon bycatch sample set differed from the mean of the 20052011 estimates for the two Asian regions, but not for the North American regions. The pattern of changes of regional stock contributions over three time periods in 2012 differed from previous years for some regions. There were some spatial differences in stock distribution; e.g., the East Asian stock contribution was higher in the central Bering Sea than in the southeastern Bering Sea. As with the bycatch samples, the salmon excluder device test samples included fish from all geographic regions despite being collected at small spatial and temporal scales.
AFSC/ABL: Genetic analysis of juvenile chum salmon from the Chukchi Sea and Bering Strait
공공데이터포털
The Arctic region has experienced warming in recent years, resulting in decreased summer sea ice cover and increased sea surface temperatures. In 2007, the U.S. BASIS survey extended surface trawling into the Chukchi Sea; juvenile chum salmon were collected at most stations. Genetic methods were applied to identify the origin of the juvenile chum salmon collected in the Chukchi Sea and Bering Strait. Most of the juvenile chum salmon caught in the Bering Strait were from northern Russian populations and the majority collected in the Chukchi Sea were from northwestern Alaska populations.
AFSC/ABL: Eastern Bering Sea (BASIS) Coastal Research on Juvenile Salmon
공공데이터포털
Pacific salmon (Oncorhynchus spp.) runs in rivers that flow into the eastern Bering Sea have been inconsistent and at times very weak. Low returns of chinook (O. tshawytscha) and chum (O. keta) salmon to the Yukon River, Kuskokwim River, and Norton Sound areas of Alaska prompted the state of Alaska to restrict commercial and subsistence fisheries during 2000 and declare the region a fisheries disaster area. Weak salmon returns to these river systems follow several years of low sockeye (O. nerka) salmon returns to Bristol Bay, which was declared a fisheries disaster region during 1998 by both the State of Alaska and the U.S. Department of Commerce. Causes of the poor salmon returns to these river systems are not known however, the regional-scale decline of these stocks indicates that the marine environment may play a critical role. Ocean conditions, particularly in the first few months after the salmon leave fresh water, are known to significantly affect salmon survival (Holtby et al. 1990; Friedland et al. 1996; Beamish and Mahnken 2001). Mechanisms affecting marine survival of the eastern Bering Sea salmon stocks are unknown, principally due to the lack of marine life history information on western Alaska salmon. To improve understanding of the marine life-history stage of salmon in the Bering Sea, the North Pacific Anadromous Fish Commission (NPAFC) began an internationally coordinated research program on salmon in the Bering Sea called the Bering-Aleutian Salmon International Survey (BASIS) (NPAFC 2001). As part of BASIS, scientists from the National Marine Fisheries Service (NMFS), Ocean Carrying Capacity (OCC) program conducted a fall survey on the eastern Bering Sea shelf to provide key ecological data for eastern Bering Sea salmon stocks during their juvenile life-history stage. The goal of the OCC/BASIS salmon research cruise was to understand mechanisms underlying the effects of environment on distribution, migration, and growth of juvenile salmon on the eastern Bering Sea shelf. Primary objectives of BASIS include: 1) to determine the extent of offshore migrations of juvenile salmon from rivers draining into the eastern Bering Sea, 2) to describe the physical environment of the eastern and northeastern Bering Sea shelf occupied by juvenile salmon, and 3) to collect biological information on other ecologically important species. Summaries of previous Bering Sea juvenile salmon research cruises can be found in Farley et al. (1999, 2000, 2001, 2002, 2004, 2005).
AFSC/ABL: 2007-2013 Chinook Salmon Bycatch Sample
공공데이터포털
A genetic analyses of samples from the Chinook salmon (Oncorhynchus tshawytscha) bycatch from the 2007-2013 Bering Sea-Aleutian Island and Gulf of Alaska trawl fisheries for walleye pollock (Gadus chalcogrammus) were undertaken to determine the overall stock composition of the bycatch. Samples were genotyped for 43 single nucleotide polymorphism (SNP) DNA markers and results were estimated using the Alaska Department of Fish and Game (ADF&G) SNP baseline.