A survey of sediment toxicity was carried out by NOAA's National Status and Trends Program in the coastal bays that surround Long Island Sound in New York and Connecticut. The survey objectives were to determine the spatial distribution and severity of toxicity, and to analyze the relationships between toxicity and chemical contamination in the sediments. Sediment samples from three stations in each of 20 coastal bays and one Long Island Sound site were tested for toxicity with three independent protocols: (1) a 10-day amphipod survival test of the whole, solid-phase sediments with Ampelisca abdita, (2) a 48-hour exposure of clam larvae, Mulinia lateralis, to sediment elutriates, with normal development and survival as the endpoints, and (3) a microbial bioluminescence test (MicrotoxR) using solvent extracts of the sediments. Separate samples from these same stations were analyzed chemically for a broad suite of potentially toxic contaminants, including heavy metals, polynuclear aromatic hydrocarbons (PAH), chlorinated pesticides and polychlorinated biphenyls. Additional sediment samples were obtained from up to six additional stations in a few of the coastal bays; these samples were examined only for heavy metals contamination and the data are included in an appendix to this report.The survey results indicate that sediment toxicity is widespread in the coastal bays of Long Island Sound. Significant toxicity was indicated for the sediments from at least one of the stations in each of the 20 coastal bays sampled in this survey. Manhassett Bay, Oyster Bay, and Little Neck Bay, New York were the three most toxic bays, respectively, as indicated by the incidence of significant toxicity from the three tests on samples from three stations. Only 11 of the 60 stations showed no significant toxicity in any of the three tests. Branford Harbor and the Connecticut River were indicated as the least toxic bays by this approach. About one-fifth of the total area (79.1 km2) sampled within the 20 embayments was indicated as significantly toxic by all three tests (survival of amphipods and larval bivalves, and MicrotoxTM).

This study was based on the sediment quality triad (SQT) approach. A stratified probabilistic sampling design was utilized to characterize the Chesapeake Bay system in terms of chemical contamination, sediment toxicity (Microtox, amphipod bioassay; sea urchin gamete bioassay; and P450 biomarker) and benthic infaunal community structure. The purpose was to define the extent and magnitude of toxicity and other biological effects associated with contaminants in the mainstem Chesapeake estuary and major western subestuaries. This file contains data measured in the Chesapeake Bay estuary system sampled in 1998, 1999, and 2001. Samples were collected for sediment analyses.

This study was based on the sediment quality triad (SQT) approach. A stratified probabilistic sampling design was utilized to characterize the Delaware Bay system in terms of chemical contamination, sediment toxicity (Microtox, amphipod bioassay; sea urchin gamete bioassay; and P450 biomarker) and benthic infaunal community structure. The purpose was to define the extent and magnitude of toxicity and other biological effects associated with contaminants in the Delaware estuary system from the fall line to the mouth of the Bay. This file contains data measured in the Delaware Bay Estuary and adjacent waters during 1997. Samples were collected for water and sediment analyses.

Surficial sediment samples were collected from 162 locations within five estuaries - Charleston Harbor, Winyah Bay, Leadenwah Creek, Savannah River, and St. Simons Sound - in coastal South Carolina and Georgia in a survey of sediment toxicity performed in 1993 and 1994. All samples were tested for toxicity and a battery of complimentary laboratory bioassays. The laboratory bioassays consisted of amphipod survival tests in solid-phase sediments, microbial bioluminescence (Microtox) tests of organic solvent extracts, and sea urchin fertilization and embryo development tests of porewaters. Some samples were also tested in copepod reproduction and cytochrome P-450 RGS bioassays. Chemical analyses for a suite of trace metals, organic compounds and sedimentological factor were performed with portions of most samples.

This study was based on the sediment quality triad (SQT) approach. A stratified probabilistic sampling design was utilized to characterize the Kachemak Bay system in terms of chemical contamination, sediment toxicity and benthic infaunal community structure. The purpose was to define the extent and magnitude of toxicity and other biological effects associated with contaminants in the Kachemak Bay system. Five strata (Homer harbor, Western intertidal, Western subtidal, Eastern intertidal, and Eastern subtidal) were established in the shallow (less than 10 fathoms) northern area of the bay. Sediment samples were collected at multiple stations in each strata. A broad suite of sediment contaminants were analyzed at each station, including polynuclear aromatic hydrocarbons (PAHs), chlorinated pesticides including DDT and its metabolites, polychlorinated biphenyls (PCBs), trace elements, and butyl-tins Other parameters included grain size analysis, total organic/inorganic carbon (TOC/TIC), and percent solids. Characterization of infaunal assemblages and the abundance of organisms present in sediments provide additional information to help determine areas of degraded sediments. Whole sediment toxicity bioassays with two species of amphipod were conducted to test for overt contaminant toxicity. This project provides invaluable baseline data on sediment infauna species richness, chemical contamination and toxicity that is georeferenced and posted on the internet through the NOAA's National Status and Trends data portal.

This study was based on the sediment quality triad (SQT) approach. A stratified probabilistic sampling design was utilized to characterize the San Francisco Bay system in terms of chemical contamination, sediment toxicity (Microtox, amphipod bioassays; sea urchin gamete bioassay; and P450 biomarker) and benthic infaunal community structure. The purpose was to define the extent and magnitude of toxicity and other biological effects associated with contaminants in the San Francisco estuary system from the delta to the south Bay and out to the Golden Gate. This file contains data measured in the San Francisco Bay Estuary in 2000 and 2001. Samples were collected for water and sediment analyses.

The toxicity of sediments in Pensacola, Choctawhatchee, St. Andrew and Apalachicola Bays was determined as part of bioeffects assessments performed by NOAA's National Status and Trends Program. The objectives of the survey were to determine: (1) the spatial patterns in toxicity throughout each bay, (2) the spatial extent of toxicity throughout and among the bays, (3) the severity or degree of toxicity, and (4) the relationships between chemical contamination and toxicity. The survey was conducted over two years: Pensacola Bay and St. Andrew Bay were sampled in 1993; and Choctawhatchee Bay, Apalachicola Bay and Bayou Chico (a sub-basin of Pensacola Bay) were sampled during 1994. Surficial sediment samples were collected from 123 randomly-chosen locations throughout the five areas. Multiple toxicity tests were conducted on all samples, and chemical analyses were performed on 102 of the 123 samples. Toxicological tests were conducted to determine survival, reproductive success, morphological development, metabolic activity, and genotoxicity; all bays showed toxicity in at least some of the samples. Toxicity was most severe in Bayou Chico, an industrialized basin adjoining Pensacola Bay. Other developed bayous adjoining Pensacola Bay and the other bays also showed relatively severe toxicity. The main basins of the bays generally showed lower toxicity than the adjoining bayous. The different toxicity tests, however, indicated differences in severity, incidence, spatial patterns, and spatial extent in toxicity. The most sensitive test, a bioassay of metabolic activity of bioluminescent bacteria, indicated toxicity was pervasive throughout the entire study area. The least sensitive test, an acute bioassay performed with a benthic amphipod, indicated toxicity was restricted to a very small portion of the area. Causes of toxicity were not determined in the survey. However, mixtures of potentially toxic substances, including pesticides, petroleum constituents, trace metals, and ammonia, were associated statistically with the measures of toxicity. The concentrations of many substances were highest in Bayou Chico, where the most severe toxicity was observed. At these toxic sites, some of the substances had considerably elevated concentrations, often exceeding numerical guidelines or known toxicity thresholds. The relationships between toxicity and chemical concentrations differed among the bays and toxicity tests.

This study was based on the sediment quality triad (SQT) approach. The purpose was to define the extent and magnitude of contamination and biological effects associated with contaminants in the Massachusetts/Cape Cod Bays, Stellwagen Bank, and Boston Harbor. A stratified probabilistic sampling design was utilized to characterize the systems in terms of chemical contamination and benthic infaunal community structure. In addition, samples were taken in the vicinity of the new Boston sewage outfall in Massachusetts Bay and in Boston Harbor where the sewage outfall used to discharge. Toxicity bioassays were not done. A secondary objective was to coordinate with the NOAA NMFS to collect sediment and fish tissue samples at previously sampled Benthic Surveillance Program sites. This file contains sediment and water data measured in all areas sampled in 2004.

The purpose of this effort was to characterize the extent and magnitude of chemical contamination in the St. Thomas East End Reserves or STEER, as part of a larger project to develop an integrated ecosystem assessment for the STEER. The STEER is a collection of marine reserves and wildlife sanctuaries on the southeastern end of the island of St. Thomas, US Virgin Islands. Within the STEER, however, are a variety of land use and maritime activities that are thought to impact the Reserves. As part of a project requested by STEER managers and funded by CRCP, NCCOS/CCMA scientists conducted a field mission in June 2011 to the STEER, and collected sediments that were characterized for chemical contaminants. A broad suite of chemical contaminants were analyzed in sediment, coral (Porites asteroides) and conch (Strombus gigas)samples including polycyclic aromatic hydrocarbons (PAHs), chlorinated pesticides including DDT and its metabolites, polychlorinated biphenyls (PCBs), major and trace elements, and butyltins. This project provides valuable baseline data on sediment chemical contamination that is georeferenced and posted on the internet through the NOAAs National Status and Trends data portal.