Whales Tail Marsh, a restored salt pond in South San Francisco Bay, California, is experiencing rapid shoreline erosion. Determining whether the eroded sediment is exported to the ocean or imported via tidal channels and deposited on the marsh platform is critical to understanding the long-term response of the marsh to wave attack and sea-level rise. Quantifying water-column sediment flux helps to characterize the role of tidal channels in this process, and water discharge is a key component of sediment flux. To that end, discharge was measured repeatedly over diurnal tidal cycles in the tidal channels of the Whales Tail Marsh, within Eden Landing Ecological Refuge, California in the summer of 2021 and during king tides in the winter of 2021-2022. These transect data were collected by using a downward-looking Teledyne RDI RiverPro 1200-kilohertz acoustic doppler current profiler (ADCP) from a moving boat.

Hydrodynamic and sediment transport time-series data, including water depth, velocity, turbidity, conductivity, and temperature, were collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at shallow subtidal and intertidal sites in Corte Madera Bay and San Pablo Bay National Wildlife Refuge (SPNWF) in San Francisco Bay, CA, as well as on the marsh plain of SPNWF marsh and in a tidal creek and on the marsh plain of Corte Madera Marsh, in 2022 and 2023. Data files are grouped by station, San Pablo subtidal, San Pablo intertidal, San Pablo marsh, Corte Madera subtidal, Corte Madera intertidal, Corte Madera marsh, or Corte Madera tidal creek, then by instrument type. At most stations there were periods of low water when sensors were no longer submerged, resulting in spurious data. In addition, most instruments experienced some degree of biofouling, particularly at the subtidal and intertidal stations. The subtidal stations also occasionally show signs of platform rocking or movement due to strong water flow, and/or from accidental fisher/boater interference. Users are advised to assess data quality carefully, and to check the metadata for instrument information, as platform deployment times and data-processing methods varied.

Hydrodynamic and sediment transport time-series data, including water depth, velocity, turbidity, conductivity, and temperature, were collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at shallow subtidal and intertidal sites in Corte Madera Bay and San Pablo Bay National Wildlife Refuge (SPNWF) in San Francisco Bay, CA, as well as on the marsh plain of SPNWF marsh and in a tidal creek and on the marsh plain of Corte Madera Marsh, in 2022 and 2023. Data files are grouped by station, San Pablo subtidal, San Pablo intertidal, San Pablo marsh, Corte Madera subtidal, Corte Madera intertidal, Corte Madera marsh, or Corte Madera tidal creek, then by instrument type. At most stations there were periods of low water when sensors were no longer submerged, resulting in spurious data. In addition, most instruments experienced some degree of biofouling, particularly at the subtidal and intertidal stations. The subtidal stations also occasionally show signs of platform rocking or movement due to strong water flow, and/or from accidental fisher/boater interference. Users are advised to assess data quality carefully, and to check the metadata for instrument information, as platform deployment times and data-processing methods varied.

Hydrodynamic and sediment transport time-series data, including water depth, velocity, turbidity, conductivity, and temperature, were collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center at three locations in the Sacramento-San Joaquin Delta. Data were collected in Lindsey Slough in April 2017, and Middle River and the Mokelumne River in March 2018. Data files are grouped by location. At each of the three sites, data were collected at stations outside and within patches of vegetation, to determine how submerged invasive vegetation influences tidal currents and suspended-sediment concentration. The Table below shows the data types collected at each station, and classifies stations as Vegetated (V) or Unvegetated (U). These data were collected as part of a study of the effects of invasive aquatic vegetation on sediment transport in the Sacramento-San Joaquin Delta. At times, vegetation caught on instrument frames (both within and outside patches) compromised data quality. Users are advised to check data quality carefully, and to check metadata and instrument information, as individual instrument deployment times vary.

Spatial surveys of water column physical properties were acquired with a conductivity-temperature-depth (CTD) profiler for five (5) surveys in summer 2021 and three (3) surveys in winter 2021-2022 during king tides along transects of tidal creeks in the Whales Tail Marsh, South San Francisco Bay, California. The data are provided in netCDF files.

Spatial surveys of water column physical properties were acquired with a conductivity-temperature-depth (CTD) profiler for five (5) surveys in summer 2021 and three (3) surveys in winter 2021-2022 during king tides along transects of tidal creeks in the Whales Tail Marsh, South San Francisco Bay, California. The data are provided in netCDF files.

Topographic data were collected in the Whale's Tail marsh in southern San Francisco Bay between December 2021 and January 2022. The topographic data were acquired using global satellite navigation system receivers mounted on backpacks and hiked over the marsh surface.

Topographic data were collected in the Whale's Tail marsh in southern San Francisco Bay between December 2021 and January 2022. The topographic data were acquired using global satellite navigation system receivers mounted on backpacks and hiked over the marsh surface.

Bathymetric data collected in Whales Tail Marsh tidal creeks, South San Francisco Bay, California, in 2023 with a shallow draft vessel equipped with a single-beam sonar system and global navigation satellite system (GNSS) receiver. The bathymetric data are provided in a comma-separated text file.

Hydrodynamic and sediment transport time-series data, including water depth, velocity, turbidity, conductivity, and temperature, were collected by the U.S. Geological Survey (USGS) Pacific Coastal and Marine Science Center within two embayments of San Francisco Bay. Data were collected in San Pablo Bay and Grizzly Bay from June to August 2019 at seven unique stations. Data files are grouped by area (shallows of San Pablo Bay, channel of San Pablo Bay, and shallows of Grizzly Bay). Each shallow site contained a variety of sensors located on two tripods and one surface mooring, while the channel site consisted of one tripod. Users are advised to assess data quality carefully, and to check metadata for instrument information, as platform deployment times and data-processing methods varied.