Genetic Analysis Database

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Samples of skin and other tissues are collected from marine mammals along the U.S. east coast by a variety of researchers. Samples may be collected from live animals through remote biopsy or live-capture, stranded animals, or animals captured incidentally during fishery operations. DNA is extracted from these samples, sequenced, and analyzed using a variety of methods to support phylogenetic studies, stock delineation studies, and a variety of other analyses related to cetacean genetics in U.S. waters. These data sets include the sequence and other genetic data collected from these samples along with analytical results. These data contribute to delineation of stocks described in annual Marine Mammal Protection Act stock assessment reports.

Genetic Sample Inventory - NRDA

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This database archives genetic tissue samples from marine mammals collected in the North-Central Gulf of Mexico from 2010-2015. The collection includes samples from field sampling programs and stranding data. Data includes field identification numbers, location and date information, collection information, and disposition of samples. These data support stock delineation studies and a variety of other analyses related to cetacean genetics in the Gulf of Mexico related to the Deepwater Horizon oil spill.

Genetic Analysis Database - NRDA

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Samples of skin and other tissues are collected from marine mammals along the North-Central Gulf of Mexico from live animals through remote biopsy or live-capture or stranded animals during 2010-2014. DNA is extracted from these samples, sequenced, and analyzed using a variety of methods to support phylogenetic studies, stock delineation studies, and a variety of other analyses related to cetacean genetics associated with the Natural Resources Damage Assessment associated with the Deepwater Horizon oil spill. These data sets include the sequence and other genetic data collected from these samples along with analytical results. These data support stock delineation studies and a variety of other analyses related to cetacean genetics and are incorporated into the Deepwater Horizon Damage Assessment and Restoration Plan.

DNA data

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Raw DNA chromatogram data produced by the ABI 373, 377, 3130 and 3730 automated sequencing machines in ABI format. These are from fish (primarily Sebastes spp., Seriola lalandi, and several shark species) and invertebrates (primarily Haliotis spp.). These data are in either of 2 formats, ".fsa" files containing chromatograms used for genotyping, and ".ab1" files containing chromatograms of DNA sequences. These data are used for studies on taxonomy, population connectivity, species identification, and studies of mating systems

FRD tissue archive

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The fishery genetics tissue collection has over 80,000 tissues stored in 95% ethanol representing fishes and invertebrates collected globally but with a focus on the North Pacific. These samples are focused on sharks (primarily blue, mako and common thresher), groundfish (primarily Sebastes spp.), and highly migratory species (tunas, billfish, yellowtail, opah) but also contain assorted other samples including parasites from some animals, eggs and larvae, and abalone (primarily pink abalone).

SE Marine Mammal Histology/Tissue data

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Tissue samples are collected from stranded marine mammals in the Southeastern United States. These tissue samples are examined histologically and evaluated to identify diseases, parasites, and other factors that may result in morbidity and mortality of marine mammals. These data document the different types of diseases or other health effects seen in stranded marine mammals.

AFSC/FMA/Salmon Genetics From Observer Specimens

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Genetic data of salmon bycatch samples collected by fisheries observers are used for mixed-stock analyses to determine geographic region of origin. This work is done at the Auk Bay Lab in Juneau Alaska. The data are loaded to the the North Pacific Halibut and Groundfish database maintained by FMA Division at the Alaska Fisheries Science Center in Seattle Washington

Salish Sea Genetics - Salish Sea genetic inventory

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The Salish Sea comprises most of the Puget Sound water area. Marine species are generally assemblages of discrete populations occupying various ecological niches. Genetic changes to populations can occur as a result of genetic drift, introgression between populations, local adaptation, etc. This project provides genetic baseline data to monitor genetic change in plants, animals, and algae. Genetic data.

Tissue Tracking System

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NEFSC holds a sample inventory of marine mammal parts collected from stranded and bycaught animals as well as from our field research activities. The database holds the metadata for our sample holdings and records transactions of transfer of samples to other labs and researchers.

Mission Bay Collection

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During the period 1987-2009 the Southwest Region (now West Coast Region) collected beach seine fish samples in the San Diego area in conjunction with eelgrass restoration projects. Data collected included location, species, length and number.