Wanjugi et al 2016 Data Set
공공데이터포털
Decomposition data of bacterial and viral fecal indicators in common human pollution types. This dataset is associated with the following publication: Wanjugi, P., M. Sivaganesan, A. Korajkic, C. Kelty, B. McMinn, R. Ulrich, V. Harwood, and O. Shanks. Differential Decomposition of Bacterial and Viral Fecal Indicators in Common Human Pollution Types. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 105: 591-601, (2016).
Stachler et al. 2017 Figure 2 data
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Estimated mean log10 concentration of genetic markers for CQQ_056, CPQ_064, HF183/BacR287, and HumM2 genetic markers in nine sewage and two surface water samples. This dataset is associated with the following publication: Stachler, E., C. Kelty, M. Sivaganesan, X. Li, K. Bibby, and O. Shanks. Quantitative CrAssphage PCR Assays for Human Fecal Pollution Measurement. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 51(16): 9146-9154, (2017).
Stachler et al. 2017 Figure 2 data
공공데이터포털
Estimated mean log10 concentration of genetic markers for CQQ_056, CPQ_064, HF183/BacR287, and HumM2 genetic markers in nine sewage and two surface water samples. This dataset is associated with the following publication: Stachler, E., C. Kelty, M. Sivaganesan, X. Li, K. Bibby, and O. Shanks. Quantitative CrAssphage PCR Assays for Human Fecal Pollution Measurement. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 51(16): 9146-9154, (2017).
Full-Scale qPCR FSI in the Tillamook Bay Watershed April 2019
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Fecal source identification qPCR, land use, and weather data used in the manuscript entitled, "Large-Scale Implementation of Standardized Quantitative Real-Time PCR Fecal Source Identification Procedures in the Tillamook Bay Watershed". This dataset is associated with the following publication: Li, X., M. Sivaganesan, C. Kelty, A. Zimmer-Faust, P. Clinton, J. Reichman, Y. Johnson, W. Matthews, S. Bailey, and O. Shanks. Large-scale implementation of standardized quantitative real-time PCR fecal source identification procedures in the Tillamook Bay Watershed. PLoS ONE. Public Library of Science, San Francisco, CA, USA, 14(6): e0216827, (2019).
Schoen et al 20xx Data Set
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Human-associated genetic marker concentrations in raw sewage. This dataset is associated with the following publication: Schoen, M.E., A.B. Boehm, J. Soller, and O. Shanks. Contamination Scenario Matters when Using Viral and Bacterial Human-Associated Genetic Markers as Indicators of a Health Risk in Untreated Sewage-Impacted Recreational Waters. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 54(20): 13101–13109, (2020).
Brumfield et al 20xx Data Set
공공데이터포털
Log10 fecal score ratios for eligible microbial source tracking qPCR assays. This dataset is associated with the following publication: Brumfield, K.D., J.A. Cotruvo, O. Shanks, M. Sivaganesan, J. Hey, N.A. Hasan, A. Huq, R.R. Colwell, and M.B. Leddy. Metagenomic Sequencing and Quantitative Real-Time PCR for Fecal Pollution Assessment in an Urban Watershed. Frontiers in Water. Frontiers, Lausanne, SWITZERLAND, 3: 626849, (2021).
Brumfield et al 20xx Data Set
공공데이터포털
Log10 fecal score ratios for eligible microbial source tracking qPCR assays. This dataset is associated with the following publication: Brumfield, K.D., J.A. Cotruvo, O. Shanks, M. Sivaganesan, J. Hey, N.A. Hasan, A. Huq, R.R. Colwell, and M.B. Leddy. Metagenomic Sequencing and Quantitative Real-Time PCR for Fecal Pollution Assessment in an Urban Watershed. Frontiers in Water. Frontiers, Lausanne, SWITZERLAND, 3: 626849, (2021).
Longitudinal Microbial Source Tracking Dataset
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Dataset describes measurements of host-associated qPCR genetic markers along with other water quality parameters and precipitation from samples collected at marine, estuary, and freshwater recreational sites. Additional details provided in attached Dataset Description document. “This research dataset has been reviewed in accordance with U.S. Environmental Protection Agency (U.S. EPA), Office of Research and Development, and approved for release. Mention of brand names or vendors does not constitute an endorsement of products or services by the U.S. EPA.”
Concentrations of human fecal indicators in wastewater in Kentucky sewersheds
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This dataset reports concentrations of RNAse P, PMMoV, and CrAssphage, as measured by qPCR, in wastewater at 28 sites including water treatment plants as well as smaller sewersheds. All sites are in the Louisville, KY, USA metro area. This dataset is not publicly accessible because: The data was generated and is being stored with the first author, a non-EPA resesarcher. It can be accessed through the following means: This data can be accessed by emailing the first author, Rochelle Holm, at rochelle.holm@louisville.edu. Format: Excel spreadsheets with columns for the site, sample collection time and date, and concentration of RNase P, PMMoV, and CrAssphage (copies/ml of wastewater). This dataset is associated with the following publication: Holm, R., M. Nagarkar, R. Yeager, D. Talley, A. Chaney, J. Rai, A. Mukherjee, S. Rai, A. Bhatnagar, and T. Smith. Surveillance of RNase P, PMMoV and CrAssphage in wastewater as indicators of human fecal density across urban sewer neighborhoods Kentucky. FEMS Microbes. Oxford University Press, OXFORD, UK, 3(1): 1-12, (2022).