Genome sequence, PCR clone sequences and qPCR data. This dataset is associated with the following publication: Linz, D., K. McIntosh, I. Struewing, S. Klemm, B. McMinn, R. Haugland, E. Villegas, and J. Lu. Genomic Characterization and Wetland Occurrence of a Novel Campylobacter Isolate from Canada Geese. Microorganisms. MDPI, Basel, SWITZERLAND, 11(3): 648, (2023).
Campy STICS data. This dataset is associated with the following publication: Lye, D., I. Struewing, T. Gruber, K. Oshima, E. Villegas, and J. Lu. A Gallus gallus Model for Determining Infectivity of Zoonotic Campylobacter. Frontiers in Microbiology. Frontiers, Lausanne, SWITZERLAND, 10: 2292, (2019).
Campylorhynchus brunneicapillus single nucleotide polymorphism genotype data from southern California, USA
공공데이터포털
This dataset contains 184 single nucleotide polymorphism (SNP) genotypes of Campylorhynchus brunneicapillus (Cactus Wren) sampled in southern California. Genomic markers were generated from ddRAD loci and analyzed using the Stacks v2.60 pipeline. The genotypes for all samples are provided in a VCF file with 40,707 independent loci. A companion sample data file is provided with sample names, location, and other data. These files may be opened and edited in a text editor program, such as Notepad (PC) or BBEdit (Mac). The .vcf file can be loaded into the Stacks population program to calculate genetic diversity statistics, or loaded into R, using vcfR, for further analysis.
Datasheet-Detroit Lake-OR
공공데이터포털
The data include the abundance and community compositions characterized using qPCR and metagenomic sequences. This dataset is associated with the following publication: Jeon, Y., I. Struewing, K. Clauson, N. Reetz, N. Fairchild, L. Goeres-Priest, T. Dreher, R. Labiosa, K. Carpenter, B. Rosen, E. Villegas, and J. Lu. Dominant Dolichospermum and microcystin production in Detroit Lake (Oregon, USA). Harmful Algae. Elsevier B.V., Amsterdam, NETHERLANDS, 142: 102802, (2025).
Brumfield et al 20xx Data Set
공공데이터포털
Log10 fecal score ratios for eligible microbial source tracking qPCR assays. This dataset is associated with the following publication: Brumfield, K.D., J.A. Cotruvo, O. Shanks, M. Sivaganesan, J. Hey, N.A. Hasan, A. Huq, R.R. Colwell, and M.B. Leddy. Metagenomic Sequencing and Quantitative Real-Time PCR for Fecal Pollution Assessment in an Urban Watershed. Frontiers in Water. Frontiers, Lausanne, SWITZERLAND, 3: 626849, (2021).
This data covers reverse transcriptase qPCR quantification of microcystin gene activity during the summer bloom seasons in 2015, 2016 and 2017 for08/20/2019 Harsha Lake in Ohio. This dataset is associated with the following publication: Wymer, L., S. Vesper, I. Struewing, J. Allen, and J. Lu. Possible Antagonism between Cladosporium cladosporioides and Microcystis aeruginosa in a Freshwater Lake during Bloom Seasons. Life. MDPI, Basel, SWITZERLAND, 12(5): 742, (2022).