ARCHIVED: Mpox Case Summary
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In early February 2024, we will be retiring the Mpox Case Summary dataset. This dataset will be archived and no longer update. A historic record of this data will remain available. A. SUMMARY This dataset represents probable and confirmed mpox cases per CDC case definitions among San Francisco residents reported to the San Francisco Department of Public Health. Data are lagged by 4 days, based on the most recent date a case is received by the source system. B. HOW THE DATASET IS CREATED Case information is based on confirmed or probable positive laboratory tests reported to the San Francisco Department of Public Health. Processes to provide quality assurance and other data verification are completed before the data are reported. These data may not be immediately available for recently reported cases because of the time needed to process tests and validate cases. Data are continually updated to maximize completeness of information and reporting on San Francisco residents with confirmed or probable mpox. To ensure data privacy, we suppress data when cumulative counts are between 1-4. The exception to this rule is for the response option “Unknown” which does not provide any identifying information. If only one response option has a count <5 we also suppress the response option with the second lowest count (including “Unknown” or a response option with a count of 0). If the second lowest response option is 0, both response options will display “<5”. If the second lowest response option is a number greater than 0 both response options will display “< [sum of two lowest counts]”. Data notes for population characteristic types are listed below. Race/ethnicity * The response option "Other" is categorized by the source system, and the response option "Unknown" refers to a lack of data. Gender * The response option "Other" is categorized by the source system, and the response option "Unknown" refers to a lack of data. Sexual orientation * The response option "Other" is categorized by the source system, and the response option "Unknown/Declined" refers to a lack of data or those who did not disclose their sexual orientation. * The response option “Gay, Lesbian, or Same-Gender Loving” is a standard reporting option and cannot be split into individual categories. This is a limitation of the data from the source system. Sexual contact during incubation period * We track whether mpox cases had sexual contact during the 21 days prior to symptom(s) onset. This timeframe is the incubation period. * The response option "Unknown/Declined" refers to a lack of data or those who did not disclose their sexual contact history. For convenience, we provide the 2020 5-year American Community Survey population estimates. C. UPDATE PROCESS Updates to the data are made through automated and manual processes Monday through Friday. D. HOW TO USE THIS DATASET This dataset shows total cases (probable and confirmed) by population characteristics. Filter the “characteristic_type” column to explore a topic area. Then, the “characteristic_group” column shows each group or category within that topic area and the total count of cases identified within that population subgroup. E. CHANGE LOG,
ARCHIVED: COVID-19 Vaccinations Given to SF Residents Over Time
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A. SUMMARY This dataset represents the COVID-19 vaccinations given to residents of San Francisco over time. All vaccines given to SF residents are included, no matter where the vaccination took place (the vaccine may have been administered in San Francisco or outside of San Francisco). This dataset also includes COVID-19 vaccinations given to SF residents by the San Francisco Department of Public Health (SFDPH) over time. Data provides counts for residents who have received at least one dose, residents who have completed a primary vaccine series, residents who have received one or two monovalent (not bivalent) booster doses, and residents who have received a bivalent booster dose. A primary vaccine series is complete after an individual has received all intended doses of the initial series. There are one, two, and three dose primary vaccine series. B. HOW THE DATASET IS CREATED Information on doses administered to those who live in San Francisco is from the California Immunization Registry (CAIR2), run by the California Department of Public Health (CDPH). C. UPDATE PROCESS Updated daily via automated process D. HOW TO USE THIS DATASET Before analysis, you must filter the dataset to the desired stratification of data using the "administering_provider_type" column. To get vaccination counts of all SF residents regardless of provider, filter to "administering_provider_type" = ‘All Providers’. To get vaccination counts administered by SFDPH to SF residents, filter to "administering_provider_type" = ‘DPH Only’. To count the number of individuals vaccinated (with any primary series dose) for the first time on a given day, use the "new_recipients" column. To count the number of individuals who have completed their primary vaccine series on a given day, use the "new_series_completed" column. To count the number of primary series doses administered on a day (1st, 2nd, 3rd, or single doses), use the "new_primary_series_doses" column. To count the number of individuals who received their first or second monovalent (not bivalent) booster dose on a given day, use the "new_booster_recipients" and "new_2nd_booster_recipients" columns. To count the number of individuals who received their first bivalent booster dose on a given day, use the "new_bivalent_booster_recipients" column. To count the number of monovalent (not including bivalent) or bivalent booster doses administered on a given day, use the "new_booster_doses" or "new_bivalent_booster_doses" columns. To count the number of individuals who have received a vaccine up to a certain date, use the columns beginning with "cumulative_..." E. ARCHIVED DATA This dataset is a combination of two previous datasets that were archived on 10/27/2022. For historical purposes, you can access the archived datasets at the following links: ARCHIVED: COVID Vaccinations Given to SF Residents Over Time ARCHIVED: COVID Vaccinations Given to SF Residents by SF DPH Over Time F. CHANGE LOG
ARCHIVED: COVID-19 Vaccinations Given to SF Residents by Demographics
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A. SUMMARY This dataset represents the COVID-19 vaccinations given to residents of San Francisco. All vaccines given to SF residents are included, no matter where the vaccination took place (the vaccine may have been administered in San Francisco or outside of San Francisco). The data are broken down by multiple demographic stratifications. This dataset also includes COVID-19 vaccinations given to SF residents by the San Francisco Department of Public Health (SFDPH). Data provides counts for residents who have received at least one dose, residents who have completed a primary vaccine series, residents who have received one or two monovalent (not bivalent) booster doses, and residents who have received a bivalent booster dose. A primary vaccine series is complete after an individual has received all intended doses of the initial series. There are one, two, and three dose primary vaccine series. B. HOW THE DATASET IS CREATED Information on doses administered to those who live in San Francisco is from the California Immunization Registry (CAIR2), run by the California Department of Public Health (CDPH). The information on individuals’ city of residence, age, race, and ethnicity are also recorded in CAIR and are self-reported at the time of vaccine administration. In order to estimate the percent of San Franciscans vaccinated, we provide the 2016-2020 American Community Survey (ACS) population estimates for each demographic group. C. UPDATE PROCESS Updated daily via automated process D. HOW TO USE THIS DATASET San Francisco population estimates for race/ethnicity and age groups can be found in a view based on the San Francisco Population and Demographic Census dataset. These population estimates are from the 2016-2020 5-year American Community Survey (ACS). Before analysis, you must filter the dataset to the desired stratification of data using the "overall_segment" column. For example, filtering "overall_segment" to "All SF Residents by Age Bracket, Administered by All Providers" will filter the data to residents whose vaccinations were administered by any provider. You can then further segment the data and calculate percentages by Age Brackets. If you filter "overall_segment" to "All SF Residents by Race/Ethnicity, Administered by DPH Only", you will see the race/ethnicity breakdown for residents who received vaccinations from the San Francisco Department of Public Health (SFDPH). If you filter "overall_segment" to "All SF Residents by Age Group, Administered by All Providers" you will see vaccination counts of various age eligibility groups that were administered by any provider. To count the number of individuals vaccinated (with any primary series dose), use the "total_recipients" column. To count the number of individuals who have completed their primary vaccine series, use the "total_series_completed" column. To count the number of primary series doses administered (1st, 2nd, 3rd, or single doses), use the "total_primary_series_doses" column. To count the number of individuals who received one or two monovalent (not bivalent) booster doses, use the "total_booster_recipients" and "total_2nd_booster_recipients" columns. To count the number of individuals who received their first bivalent booster dose, use the "total_bivalent_booster_recipients" column. To count the number of monovalent (not including bivalent) or bivalent booster doses administered, use the "total_booster_doses" or "total_bivalent_booster_doses" columns. E. ARCHIVED DATA A previous version of this dataset was archived on 10/27/2022. For historical purposes, you can access the archived dataset at the following link: ARCHIVED: COVID-19 Vaccine Doses Given to San Franciscans by Demographics F. CHA
ARCHIVED: COVID-19 Vaccinations Given to SF Residents by Demographics Over Time
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A. SUMMARY This dataset represents the COVID-19 vaccinations given to residents of San Francisco over time. All vaccines given to SF residents are included, no matter where the vaccination took place (the vaccine may have been administered in San Francisco or outside of San Francisco). The data are broken down by multiple demographic stratifications. This dataset also includes COVID-19 vaccinations given to SF residents by the San Francisco Department of Public Health (SFDPH) over time. Data provides counts for residents who have received at least one dose, residents who have completed a primary vaccine series, residents who have received one or two monovalent (not bivalent) booster doses, and residents who have received a bivalent booster dose. A primary vaccine series is complete after an individual has received all intended doses of the initial series. There are one, two, and three dose primary vaccine series. B. HOW THE DATASET IS CREATED Information on doses administered to those who live in San Francisco is from the California Immunization Registry (CAIR2), run by the California Department of Public Health (CDPH). The information on individuals’ city of residence, age, race, and ethnicity are also recorded in CAIR and are self-reported at the time of vaccine administration. In order to estimate the percent of San Franciscans vaccinated, we provide the 2016-2020 American Community Survey (ACS) population estimates for each demographic group. C. UPDATE PROCESS Updated daily via automated process D. HOW TO USE THIS DATASET San Francisco population estimates for race/ethnicity and age groups can be found in a view based on the San Francisco Population and Demographic Census dataset. These population estimates are from the 2016-2020 5-year American Community Survey (ACS). Before analysis, you must filter the dataset to the desired stratification of data using the "overall_segment" column. For example, filtering "overall_segment" to "All SF Residents by Age Bracket, Administered by All Providers" will filter the data to residents whose vaccinations were administered by any provider. You can then further segment the data and calculate percentages by Age Brackets. If you filter "overall_segment" to "All SF Residents by Race/Ethnicity, Administered by DPH Only", you will see the race/ethnicity breakdown for residents who received vaccinations from the San Francisco Department of Public Health (SFDPH). If you filter "overall_segment" to "All SF Residents by Age Group, Administered by All Providers" you will see vaccination counts of various age eligibility groups that were administered by any provider. To count the number of individuals vaccinated (with any primary series dose) for the first time on a given day, use the "new_recipients" column. To count the number of individuals who have completed their primary vaccine series on a given day, use the "new_series_completed" column. To count the number of primary series doses administered on a day (1st, 2nd, 3rd, or single doses), use the "new_primary_series_doses" column. To count the number of individuals who received their first or second monovalent (not bivalent) booster dose on a given day, use the "new_booster_recipients" and "new_2nd_booster_recipients" columns. To count the number of individuals who received their first bivalent booster dose on a given day, use the "new_bivalent_booster_recipients" column. To count the number of monovalent (not including bivalent) or bivalent booster doses administered on a given day, use the "new_booster_doses" or "new_bivalent_booster_doses" columns. To count the number of individuals who have received a vaccine up to a certain date, use the columns beginning with "cumulative_..." E. ARCHIVED DATA A previous version of this dataset
ARCHIVED: COVID-19 Vaccinations Given to SF Residents by Geography
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A. SUMMARY This dataset represents the COVID-19 vaccinations given to residents of San Francisco summarized by the geographic region of their residential address. All vaccines given to SF residents are included, no matter where the vaccination took place (the vaccine may have been administered in San Francisco or outside of San Francisco). Data provides counts for residents who have received at least one dose, residents who have completed a primary vaccine series, residents who have received one or two monovalent (not bivalent) booster doses, and residents who have received a bivalent booster dose. A primary vaccine series is complete after an individual has received all intended doses of the initial series. There are one, two, and three dose primary vaccine series. B. HOW THE DATASET IS CREATED Information on doses administered to those who live in San Francisco is from the California Immunization Registry (CAIR2), run by the California Department of Public Health (CDPH). The information on individuals’ residential addresses is recorded in CAIR and are self-reported at the time of vaccine administration. San Francisco Department of Public Health (SFDPH) then runs additional processes to spatially match each address to a geographical region. In order to estimate the percent of San Francisco residents vaccinated, we provide the 2016-2020 5-year American Community Survey (ACS) population estimates for each analysis neighborhood. C. UPDATE PROCESS Updated daily via automated process D. HOW TO USE THIS DATASET San Francisco population estimates for geographic regions can be found in a view based on the San Francisco Population and Demographic Census dataset. These population estimates are from the 2016-2020 5-year American Community Survey (ACS). This data is grouped by SF residents’ analysis neighborhoods of residence. To query counts of individuals vaccinated by analysis neighborhood, filter to "area_type" = ‘Analysis Neighborhood’, and "id" will contain the analysis neighborhood name. To query summarized counts of all vaccinated individuals in San Francisco and whether the San Francisco Department of Public Health (SFDPH) was able to match their residential address to a location, filter to "area_type" = ‘Summary’. To count the number of individuals vaccinated (with any primary series dose), use the "count_vaccinated" column. To count the number of individuals vaccinated (with any primary series dose) by the San Francisco Department of Public Health (SFDPH), use the "count_vaccinated_by_dph" column. To count the number of individuals who have completed their primary vaccine series, use the "count_series_completed" column. To count the number of individuals who received one or two monovalent (not bivalent) boosters, use the "count_received_booster" and "count_received_2nd_booster" columns. To count the number of individuals who received at least one bivalent booster, use the "count_received_bivalent_booster" columns. E. ARCHIVED DATA A previous version of this dataset was archived on 10/27/2022. For historical purposes, you can access the archived dataset at the following link: ARCHIVED: COVID-19 Vaccines Given to San Franciscans by Geography F. CHANGE LOG