A total of 105 stations were occupied. There were two sample grids (southeast Alaska and Yakutat Bay) and two transects in the vicinity of Kayak Island. At each station we sampled using paired 20 and 60 cm Bongo frames (150 and 500 micron mesh nets, respectively) and a Sameoto neuston sampler (500 micron mesh net) to estimate the abundance of zoo- and ichthyoplankton. A SeaBird SeaCat (SBE 19 plus) was used with the bongo frames to determine the depth of the samplers in real time and to measure temperature and conductivity. At a few selected stations depth-stratified plankton were obtained with a 1 meter squared MOCNESS (500 micron mesh nets) and at other selected stations microzooplankton were sampled with vertical tows of a CalVET net (53 micron mesh).

A total of 105 stations were occupied. There were two sample grids (southeast Alaska and Yakutat Bay) and two transects in the vicinity of Kayak Island. At each station we sampled using paired 20 and 60 cm Bongo frames (150 and 500 micron mesh nets, respectively) and a Sameoto neuston sampler (500 micron mesh net) to estimate the abundance of zoo- and ichthyoplankton. A SeaBird SeaCat (SBE 19 plus) was used with the bongo frames to determine the depth of the samplers in real time and to measure temperature and conductivity. At a few selected stations depth-stratified plankton were obtained with a 1 meter squared MOCNESS (500 micron mesh nets) and at other selected stations microzooplankton were sampled with vertical tows of a CalVET net (53 micron mesh).

The cruise began when the ship departed Dutch Harbor on October 1, 2011 at 1500 ADT. Sampling commenced at collection site 1E, which corresponds to Station 1. Station number reflects the order of site occupation (see Cruise Report Table 1, Figures 1 and 2). All but one of the Semidi grid sites were successfully occupied by 10 October. Site 2B was not occupied successfully because the midwater trawl was torn by bottom contact and we chose to forgo sampling there in favor of running to the next station while the deck crew removed the tangled trawl from the net reel. Unfortunately, removing the net took about 12 hrs because the net became tangled on the reel. Only 17 of the 32 Kodiak grid sites were successfully occupied (Table 1). This was largely due to an overly ambitious cruise plan. Overall, samples were successfully collected to address cruise objectives (no. sites, gear type): time series (n=26 sites, midwater Stauffer trawl), resource selection models (RSM, n=35 sites, 3-m plumb staff beam trawl), potential prey (n=9 sites, 60-cm bongo, epibenthic sled, Van Veen grab infauna), and juvenile fish production (relevant data were collected at all sites). At nine sites, including Station 39, the sea floor was too rough to sample on bottom so only a midwater sample was collected. This additional sampling was to supplement collections made for the GOA-Integrated Ecosystem Research Program (RHeintz, see above Samples Collected) and for a study of otolith element composition. Sampling concluded after three unsuccessful attempts to obtain a sediment composition sample at Site 27G (Station 56) at approximately 03:25 on 14 October 2011.

A total of 64 stations were occupied along onshore-offshore transect lines from the Bering Strait to Barrow Canyon. At each station we sampled zooplankton using a 1m^2 Tucker Sled with 333 micron mesh nets. One net was fished entirely along the bottom. The second net collected zooplankton from the bottom to the surface. Inside this second net was a 150 micron mesh, 25 cm diamter Clarke-Bumpus net to collect the smaller zooplankton species. Both Tucker nets had a calibrated General Oceanics flow meter mounted inside the net mouth. A SeaBird FastCat (SBE 49) was attached to the top of the Tucker Sled to determine the depth of the samplers in real time and to measure temperature and conductivity. A multi-frequecy acoustic systems (TAPS-6) was also mounted on the top of the sled frame for acoustic determination of zooplankton biomass and size composition. The device insonified a small volume directly in the path of the net. During the cruise we recovered a multi-frequency acoustic device that had been moored off of Icy Cape for almost one year and then deployed two more acoustic devices to overwinter.

Data collected on this cruise included the following: We conducted a juvenile fish and benthic fish prey survery in the eastern Bering Sea (61 3-meter beam trawls, 64 modified tucker epibenthic plankton sled tows, 54 van veen benthic grab collections).

A comprehensive species list of marine invertebrates of Alaska has been lacking. The checklist of Austin (1985) treated the marine invertebrates of the southern coast of Alaska to California and since then many new species have been described, many range extensions have been discovered, and considerable changes in higher-level systematics have been made. The checklist we compiled lists over 3,500 species and includes the currently accepted scientific name and its significant synonyms, common names, type localities, geographic and depth distributions, a general statement of abundance in Alaska when known (e.g., rare, uncommon, common, abundant), and general remarks. This checklist will serve as a foundation for future species-specific research. Updated species lists are necessary to reflect the current state of biodiversity knowledge and are thus essential for conservation planning and management. To monitor and predict future changes to marine life, the distribution and abundance of marine species need to be better understood, and this can only be achieved with reliable identifications based on a sound taxonomy. The current status and future directions of Alaskan marine invertebrate biodiversity are briefly discussed.

The dataset contains records of fish eggs and larvae collected during FOCI assessment surveys. Records include all data pertinent to identify where specimens were collected (lat, lon, date, gear used, max depth of gear, water depth). Specific data on specimens includes scientific name, stage of development, number collected (whole numbers and CPUE), lengths of larvae, and diameters and stages of eggs. In addition, there are comments that explain any irregularities that may have occurred during sample collection; depending on the reason data is being extracted, comments may indicate a sample is not suitable for consideration.

The core function of the Resource Assessment and Conservation Engineering (RACE) Division is to conduct quantitative fishery surveys and related ecological and oceanographic research to measure and describe the distribution and abundance of commercially important fish and crab stocks in the eastern Bering Sea, Aleutian Islands, Gulf of Alaska, and, historically, the West Coast.The survey data are stored in a database called RACEBASE. It serves as the repository for both raw and summary data collected from the surveys dating from 1953 to present. It does not hold stream data.

The trawl database contains multiple tables of data. The ‘haul’ table contains the location, date, time and depth of the trawl haul. The ‘catch’ table contains the numbers and weights of the taxa in each haul. The ‘length’ table contains the lengths of selected taxa in each haul. There is data for the eastern Bering Sea for 2008, 2010, 2012, and 2014. There is Gulf of Alaska trawl data from 1993 to 2015.

These data are part of a ocean observation study by Stabeno, Napp, and Whitledge sponsored, in part, by the North Pacific Research Board (Project 517; http://doc.nprb.org). The grant was titled "Sentinels for Bering Sea ecosystem change." Moorings have been maintained on the southeastern Bering Sea shelf at four sites: M2 (56.9B0N, 164.1B0W) since 1995, M4 (57.9B0N, 168.9B0W) since 1996; M5 (59.9B0N, 171.7B0W) and; M8 (62.2B0N 174.7B0W) since 2004. Shipboard measurements of temperature, salinity, nutrients, chlorophyll, fluorescence and zooplankton were collected around the moorings and along the 70-m isobath on 3 cruises (3MF05, 16 April b?? 7 May; 3TT05, May 12 - 28; 8MF05, 21 September b?? 4 October) to groundtruth the in situ sensors on the moorings. This long-term monitoring supports major findings: (1) Over the southeastern shelf, the timing of the spring phytoplankton bloom is determined by the presence of ice, with an early bloom occurring if ice is present after mid-March and a later bloom if there is no sea-ice after mid-March; (2) during 2001-2005, the southeastern Bering Sea shelf underwent a marked warming (~3B0C) that was closely associated with a decrease of sea ice; with shifts in the atmospheric forcing, colder conditions returned to the Bering Sea shelf in the winter 2006 and continued into winter/spring 2007; (3) nutrients supply and summer salinity over the shelf has not significantly changed during the last three decades; (4) in association with the warming there is an indication that the abundance of cold-water zooplankton species (e.g. Calanus marshallae ) has been reduced; (5) from hydrography collected in May and September 2005 along the 70 m isobath starting at M2 in the south and ending at M8 in the north, it is evident that the structure of southern shelf is dominated by temperature, while the northern shelf is dominated by salinity. In addition, the location of the boundary between the southern shelf and northern shelf appears to vary from one year to the next and is mainly, but not completely dependent upon maximum ice extent during the spring.