RefSeq: NCBI Reference Sequence Database

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A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

Trace Archive

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A repository of DNA sequence chromatograms (traces), base calls, and quality estimates for single-pass reads from various large-scale sequencing projects.

Phenotype-Genotype Integrator (PheGenI)

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Supports finding human phenotype/genotype relationships with queries by phenotype, chromosome location, gene, and SNP identifiers. Currently includes information from dbGaP, the National Human Genome Research Institute (NHGRI) genome-wide association study (GWAS) Catalog, and Genotype - Tissue Expression (GTeX).

NCBI Datasets

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NCBI Datasets is one-stop shop for finding, browsing, and downloading genomic data. Find and download taxonomy, genome, gene, transcript, protein data, including installation of NCBI Datasets command-line tools.

Open-i

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Open-i service provides search and retrieval of abstracts and images (including charts, graphs, clinical images, etc.) from the open source literature, and biomedical image collections. Searching may be done by text queries as well as by query images.

Sequence Read Archive (SRA)

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The Sequence Read Archive (SRA) stores sequencing data from the next generation of sequencing platforms including Roche 454 GS System®, Illumina Genome Analyzer®, Life Technologies AB SOLiD System®, Helicos Biosciences Heliscope®, Complete Genomics®, and Pacific Biosciences SMRT®.

Gene

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Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

Sequence Set Browser

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This site is for browsing WGS (Whole Genome Shotgun) genomes, TSA (Transcriptome Shotgun Assemblies) and TLS (Targeted Locus Study) sets. WGS sequences are incomplete genomes that have been sequenced by a whole genome shotgun strategy. TSA sequences are transcript sequences that have been computationally assembled from primary RNA sequence data. TLS sequences are large-scale marker gene sequencing studies. Please consult WGS Submission or TSA Submission pages for more details. https://www.ncbi.nlm.nih.gov/genbank/wgs https://www.ncbi.nlm.nih.gov/genbank/tsa

Bulk Sequence - Cytogenetic Conversion Service

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This resource provides cytogenetic locations for features or sequence locations, or sequence locations for cytogenetic locations.

Cn3D

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A stand-alone application for viewing 3-dimensional structures from NCBI Entrez retrieval service. Runs on Windows, Macintosh, and UNIX and can be configured to receive data from most popular Web browsers.