Nucleotide

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The Nucleotide database is a collection of sequences from several sources, including GenBank, RefSeq, TPA and PDB. Genome, gene and transcript sequence data provide the foundation for biomedical research and discovery.

BioProject

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The BioProject database links to data that have been or will be deposited into archival databases maintained at members of the International Nucleotide Sequence Database Consortium (INSDC, which comprises the DNA DataBank of Japan (DDBJ), the European Nucleotide Archive at European Molecular Biology Laboratory (ENA), and GenBank at the National Center for Biotechnology Information (NCBI)).

Vector Alignment Search Tool (VAST)

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A computer algorithm that identifies similar protein 3-dimensional structures. Structure neighbors for every structure in MMDB are pre-computed and accessible via links on the MMDB Structure Summary pages.

Gene

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Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

Structure - Molecular Modeling Database (MMDB)

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Three dimensional structures provide a wealth of information on the biological function and the evolutionary history of macromolecules. They can be used to examine sequence-structure-function relationships, interactions, active sites, and more.

The Porcine Translational Research Database

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,The data in the Porcine Translational Research Database is supported by >5800 references, and contains 65 data fields for each entry, including >9700 full length (5′ and 3′) unambiguous pig sequences, >2400 real time PCR assays and reactivity information on >1700 antibodies. It also contains gene and/or protein expression data for >2200 genes and identifies and corrects errors (gene duplications artifacts, mis-assemblies, mis-annotations, and incorrect species assignments) for >2,000 porcine genes. This database is the largest manually curated database for any single veterinary species and is unique among porcine gene databases in regard to linking gene expression to gene function, identifying related gene pathways, and connecting data with other porcine gene database.,,

Database of Genotype and Phenotype (dbGaP)

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Database of Genotype and Phenotype (dbGaP) was developed to archive and distribute the data and results from studies that have investigated the interaction of genotype and phenotype in Humans.

CDTree

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CDTree is a stand-alone application for classifying protein sequences and investigating their evolutionary relationships. CDTree can import, analyze and update existing Conserved Domain (CDD) records and hierarchies, and also allows users to create their own.

인포보스 - 자생종 단백질 유전자 발현확률 데이터

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● 데이터 키워드 - 유전체, 유전자, NGS, DNA ● 데이터 상품 정보 - 본 상품은 자생종 유전체 분석을 통해 얻어진 유전자의 유전자군 발현확률 정보를 제공합니다. - 기능 도메인에 대해 기능별 유용성, 효소, 단백질, 병 저항성 유전자군 분류 가공 - 데이터 comparative analysis를 통해 유전자군별 발현 확률 및 계통 확률 계산 ● 컬럼 정보 - fasta format ● 활용 예제 - 본 데이터 상품을 활용하여 사용자는 다음과 같은 정보를 확인할 수 있습니다. 1) 신약 및 기능성 식품, 화장품 개발 관련 분야 기초자료 ● 기간 및 범위 - 2019년 7월 ~ 2019년 12월 [원본 데이터](https://www.bigdata-forest.kr/product/GNM201201)는 로그인 후 구매하여 다운로드 하십시오.

Demonstration of the Sequence Alignment to Predict Across Species Susceptibility Tool for Rapid Assessment of Protein Conservation

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Data file for "Vliet SMF, Hazemi M, Blatz D, Jensen M, Mayasich S, Transue TR, Simmons C, Wilkinson A, LaLone CA. Demonstration of the Sequence Alignment to Predict Across Species Susceptibility Tool for Rapid Assessment of Protein Conservation. J Vis Exp. 2023 Feb 10;(192). doi: 10.3791/63970. PMID: 36847398.". This dataset is associated with the following publication: Vliet, S., M. Hazemi, D. Blatz, M. Jensen, S. Mayasich, T. Transue, C. Simmons, A. Wilkinson, and C. Lalone. Demonstration of the Sequence Alignment to Predict Across Species Susceptibility Tool for Rapid Assessment of Protein Conservation. Journal of Visualized Experiments. JoVE, Somerville, MA, USA, 192, (2023).