This data set was generated from a study investigating potential effects of hexabromocyclododiene (HBCD) exposure across multiple generations of Japanese quail, (Coturnix japonica, JQ). Exposures ranged from dietary for the initial generation (F0), to dietary and possible maternal deposition) for the second generation (F1), and possible maternal deposition only for the third generation (F2) fed untreated, control feed. The current apical data include embryonic survival and hatching success, and morphometrics for F1 day 14 of embryonic development and F1 adult male and female, end of exposure..

This data set was generated from a study investigating potential effects of hexabromocyclododiene (HBCD) exposure across multiple generations of Japanese quail, (Coturnix japonica, JQ). Exposures ranged from dietary for the initial generation (F0), to dietary and possible maternal deposition) for the second generation (F1), and possible maternal deposition only for the third generation (F2) fed untreated, control feed. The current apical data include embryonic survival and hatching success, and morphometrics for F1 day 14 of embryonic development and F1 adult male and female, end of exposure..

The files in this data release are RNA seq datafiles from a study that examined the effects of the synthetic anabolic steroid 17β hydroxyestra 4,9,11 trien-3-one, trenbolone (17βT - CAS 10161-33-8), a common contaminant of wastes from confined animal feeding operations (CAFOs). Japanese quail (Coturnix japonica) were exposed in the egg and through feed to multiple doses of 17βT and liver transcriptomes were examined to identify genes and pathways directly affected by this androgenic compound. RNA was extracted from liver of adults and embryos and analyzed (1x50 bp) on an Illumina HiSeq 2000. NCBI Biosample accessions and the raw counts that were input into the differential expression analysis are provided in this dataset. The raw sequence data are available at the NCBI Sequence Read Archive under Bioproject numbers PRJNA313918 and PRJNA313931.

The files in this data release are RNA seq datafiles from a study that examined the effects of the synthetic anabolic steroid 17β hydroxyestra 4,9,11 trien-3-one, trenbolone (17βT - CAS 10161-33-8), a common contaminant of wastes from confined animal feeding operations (CAFOs). Japanese quail (Coturnix japonica) were exposed in the egg and through feed to multiple doses of 17βT and liver transcriptomes were examined to identify genes and pathways directly affected by this androgenic compound. RNA was extracted from liver of adults and embryos and analyzed (1x50 bp) on an Illumina HiSeq 2000. NCBI Biosample accessions and the raw counts that were input into the differential expression analysis are provided in this dataset. The raw sequence data are available at the NCBI Sequence Read Archive under Bioproject numbers PRJNA313918 and PRJNA313931.

A number of brominated flame retardants (BFRs) have been reported to interfere with the thyroid signaling pathway and cause oxidative stress in birds, yet the underlying shifts in gene expression associated with these effects remain poorly understood. In this study, we measured hepatic transcriptional responses of 31 genes in American kestrel hatchlings following in ovo exposure to one of three high-volume alternative BFRs: 1,2-bis(2,4,6-tribromophenoxy) ethane (BTPBE), bis(2-ethylhexyl)-2,3,4,5-tetrabromophthalate (TBPH), or 2-ethylhexyl-2,3,4,5-tetrabromobenzoate (EHTBB). Hatchling kestrels exhibited shifts in the expression of genes related to oxidative stress (CYP, GSTA, SOD, GPx), thyroid hormone metabolism and transport (DIO, TTR), lipid and protein metabolism (PPAR, HMGCR, FAB1, LPL), and cytokine-mediated inflammation (TLR, IL-18, IRF7, STAT3, RACK1, CEBPB). Male and female hatchlings differed in which genes were differentially expressed as well as the direction of the effect (up- vs. down-regulation). These results build upon our previous findings of increased oxidative stress and disrupted thyroid signaling pathway in the same hatchlings. Furthermore, our results indicate that inflammatory responses appear to occur in female hatchlings exposed to BTBPE and EHTBB in ovo. Gene expression analysis revealed multiple affected pathways, adding to the growing evidence that sublethal physio-logical effects are complex and are a concern for birds exposed to BTBPE, EHTBB, or TBPH in ovo.

Body weight and weight change during course of study, estimates of food and brodifacoum consumption, observations of test birds during feeding trial and at necropsy, hematocrit, prothrombin time, Russell’s viper venom time and thrombin clotting time.

Body weight and weight change during course of study, estimates of food and brodifacoum consumption, observations of test birds during feeding trial and at necropsy, hematocrit, prothrombin time, Russell’s viper venom time and thrombin clotting time.

Body weight and weight change during course of study, estimates of food and brodifacoum consumption, observations of test birds during feeding trial and at necropsy, hematocrit, and prothrombin time

This dataset provides measured in vitro intrinsic clearance rates for 54 chemicals tested using isolated hepatocytes from humans, rats, and rainbow trout. The test chemicals were selected to provide broad coverage across the industrial and pesticidal chemical space while also prioritizing chemicals of interest to EPA’s Endocrine Disruptor Screening Program (EDSP). A data evaluation framework was developed to identify results suitable for rate reporting. Acceptable results were then used to evaluate the chemical domain of applicability of the applied methods, the influence of starting substrate concentration on measured rates of intrinsic clearance, and differences in metabolic activity among species. These findings provide data for chemicals of specific interest to the EDSP. More importantly, the results provide critical guidance on future use of in vitro biotransformation assays to support high-throughput chemical risks assessments. This dataset is associated with the following publication: Black, S., J. Nichols, K. Fay, S. Matten, and S. Lynn. Evaluation and comparison of in vitro intrinsic hepatic clearance rates measured using cryopreserved hepatocytes from humans, rats, and rainbow trout. TOXICOLOGY. Elsevier Science Ltd, New York, NY, USA, 457: 152819, (2021).

This dataset documents histopathological changes in liver, kidney, skeletal muscle and intestine of captive American kestrels (Falco sparverius) exposed to brodifacoum formulations with differing elimination half-lives in target rodents. The toxicity of two brodifacoum formulations with stereoisomers having markedly different elimination half-lives in rats (Formulation A containing the 2 least persistent stereoisomers, Formulation B containing the most persistent stereoisomer) were tested in a 7-day dietary feeding trial. Based on previous kestrel studies using commercially available brodifacoum, Formulations A and B were each provided at 3 dietary concentrations (0.05, 0.1 and 0.5 µg/g diet, 4 kestrels/dose level) predicted to cause a range of toxicity. Birds were necropsied and examined grossly for hemorrhages or anemia, and liver, kidney, skeletal muscle, and intestine was collected for histopathological evaluation. Tissues stained by hematoxylin and eosin were scanned at at least 100x magnification and all hemorrhage, defined as erythrocyte extravasation, was scored on a severity scale of 0-4 (absent, minimal, mild, moderate, or severe). Other microscopic abnormalities noted within the case set were scored as absent or present. Microscopic examination revealed mild to moderate hemorrhage in 11/111 of tissues examined, including samples from the control group; hemorrhage was not related to dietary concentration of either brodifacoum formulation. Other observations in the case set included portal infiltrates in the liver (27/27), suspect polyomavirus inclusions in the kidney (14/28), renal interstitial lymphoplasmacytic infiltrates (6/28), other cellular infiltrates (17/111), myocyte degeneration or regeneration (3/28), myocellular protozoal cysts (2/28), hepatocellular glycogenosis (1/27), and minimal hepatocellular necrosis (1/27). These findings are not considered likely to be clinically significant or related to brodifacoum exposure.