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US AMLR Program zooplankton dataset
Zooplankton research in the US AMLR Program focuses on the link between prey production, availability, and climate variability in relation to predator and fishery demands. Annual studies include estimates of krill abundance, and experiments to develop and enhance hydro-acoustic methodologies. Long-term objectives include quantifying the inter-annual and decadal mesoscale (10's to 100's of kilometers) variability in water mass structure, phytoplankton biomass and productivity, and zooplankton (especially krill) associated with potential basin scale climate forcing. Conversely, the microscale (1 to 10's of kilometers) features of the distribution and abundance of krill within the foraging range of krill predators breeding at Cape Shirreff and Admiralty Bay is also studied to resolve local and remote forcing effects on predator foraging success.
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AMLR Acoustics Data 1996-2011 v1.1
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Calibrated, integrated, and averaged acoustics data, including estimates of krill (Euphausia superba) biomass density, collected around Elephant Island, the South Shetland Islands, and the Antarctic Peninsula by the U.S. AMLR Program. Data are integrated over depths from about 10-15m down to the bottom or 250m (whichever is shallower) and averaged over 1-nmi intervals.
Integrated Krill Model WG-SAM-14/20
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The integrated modeling framework for Antarctic krill (Euphausia superba) has been extended to include estimates of krill growth consistent with survey data and to use multi-nation survey data collected from 1981 to 2014 near the Antarctic Peninsula. Four models of the population dynamics of Antarctic krill in Subarea 48.1 based on different aggregations of the data are described to illustrate the capabilities of the framework.
Integrated Age-based Krill Model Fish Res 2015
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An integrated, age-structured model was fitted to different combinations of survey data using two forms of selectivity (logistic or double-logistic) with time-constant or annually varying selectivity to investigate the population dynamics of Antarctic krill (Euphausia superba) near the Antarctic Peninsula. The data were from surveys conducted by the U.S. Antarctic Marine Living Resources Program around the South Shetland Islands from 1992 to 2011. Two indices of krill biomass based on (1) trawl-net samples and (2) hydroacoustic sampling were combined with length-compositions from the nets. Sixteen model configurations using different combinations of the two biomass surveys with the various options for modeling selectivities were examined.
ADEON Raw Passive Acoustic Data
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This record represents the raw passive acoustic data collected from Atlantic Deepwater Ecosystem Observatory Network (ADEON) for the U.S. Mid- and South Atlantic Outer Continental Shelf (OCS) which was developed and deployed in November of 2017. This observatory network will generate long-term measurements of both the natural and human factors active in this region, thus informing the ecology and soundscape of the OCS. These data will provide further a mechanistic understanding of the cumulative impacts these factors have on marine resources and provide insight for ecosystem-based management efforts. Long-term observations of living marine resources and marine sound will assist Federal agencies, including BOEM, ONR, and NOAA, in complying with mandates in the Endangered Species Act (ESA), Marine Mammal Protection Act (MMPA), and Sustainable Fisheries Act (SFA).
Pacific Islands Passive Acoustic Network (PIPAN) 10kHz Data
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This catalog contains passive acoustic recordings of cetaceans taken from areas within the Pacific Islands Region since 2005.
Marine mammal acoustic survey data from sonobuoy deployments on the BROKE-WEST Survey
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Data Acquisition: DIFAR (DIrectional Fixing And Ranging) 53D sonobuoys were deployed every 30 minutes of longitude during each of the north-south sampling transects as part of the acoustic survey for marine mammals. Sonobuoys were also deployed opportunistically when large numbers of whales (in particular minke whales) were sighted. Additionally, on the initial E-W transect (#12) sonobouys were deployed prior to the majority of CTD stations. The VHF receiving system for the sonobuoys aboard the ship began with a 6 element YAGI antenna mounted atop the ship's mast. The sonobuoy's VHF signal output from the YAGI was amplified through an Advanced Receiver Research VHF amplifier and received on ICOM PCR-1000 VHF receivers modified to improve low frequency audio output. The audio signal passed through a low pass anti-alias filter (National Instruments analogue bessel SCXI module) and was recorded onto a laptop through a National Instruments E-series (model 6062E) sound card at a sampling rate of 48kHz. Difar sonobuoys have an effective audio response up to 2.5kHz before the low-pass filter roll-off starts. DIFAR bearing information is carried on 7.5 and 15kHz carrier frequencies. Once sonobuoys were deployed, recordings were made for at least 70 minutes unless the sonobuoy failed or the signal was lost. During recordings at CTD stations, recordings were typically made for the length of time it took to complete the CTD (4 or more hours). Data Processing: Signals were monitored in real-time during acquisition using Ishmael software (Dave Mellinger, http://www.bioacoustics.us/ishmael.html). A scrolling spectrogram (FFT size: 16384 samples, overlap: 50%, frequency range displayed: 0-1000 Hz, time scaling: 5 sec/cm) was monitored in real-time. Sounds of interest were clipped and the time and description were logged in the sonobuoy deployment data logs. Bearings to sounds were attained with a modified version of DiFarV (Mark McDonald, http://www.whaleacoustics.com ). Note that bearings to the ship noise given by DifarV are ~180 degrees off for an as yet undetermined reason (potentially deep cold water propagation effects), but the bearings to whale sounds and other sounds of interest are thought to be correct. This appears to be the case with a series of light bulb calibration tests I did, suggesting that bearings to other sounds are in fact, correct. After acquisition, recordings were also post-processed in Ishmael with two further passes, one examining 0-2.5kHz, and another monitoring 0-1kHz again, to ensure as many marine mammal sounds as possible were identified. Clips were also re-examined when necessary to ensure species were correctly identified. In instances when apparently multiple whales were calling, calculated bearings were used to determine whether the sounds came from different bearings, and hence, different whales. Dataset Format: The dataset description is in an excel workbook, with a summary sheet at the front. The summary sheet has a single line summarising each sonobuoy deployment. The sonobuoy deployment data log sheets are separated by days when the deployment began. Each is marked by date - eg 01.10 is the 10th of January. Each deployment has an initial entry and the following rows are a running log of the sonobuoy recording session. The data sheets and the summary sheet are in the following format with column headers from left to right: Observer(real time/post-processing)Summary of the sounds that occurred within the sample (70 minutes) Total recording length (in minutes) Date UTC time of deployment Initial latitude (decimal degrees) Initial Longitude (decimal degrees) Depth setting of sonobuoy hydrophone (90, 120, or 300m) National Instruments sound card gain (0, 5, or 10 times) Ship heading (true degrees) Ship speed (knots) Distance of deployment from CTD location (if applicable) UTC time of events (applies mainly to log of events in sonobuoy deployment data log) Species or sound description (applies mainly to
BROKE-West active acoustic data workflow
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The attached file details the workflow for the processing and analysis of active acoustic data (Simrad EK60; 12, 38, 120 and 200 kHz) collected from RSV Aurora Australis during the 2006 BROKE-West voyage. The attached file is in Echoview(R) (https://www.echoview.com/) version 8 format. The Echoview file is suitable for working with fisheries acoustics, i.e. water column backscatter, data collected using a Simrad EK60 and the file is set-up to read 38, 120 and 200 kHz split-beam data. The file has operators to remove acoustic noise, e.g. spikes and dropped pings, and operators for removing surface noise and seabed echoes. Echoes arising from krill are isolated using the ‘dB-difference’ method recommended by CCAMLR. The Echoview file is set-up to export the results of krill echo integration as both intervals and swarms. Full details of the method are available in Jarvis et al. (2010) and the krill swarms methods are described in Bestley et al. (2017).
Plainfin Midshipman Sound Production Recorded at SanctSoundSite MB02 03
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This record respresents plainfin midshipman chorusing. Chorusing was logged manually from Long-Term Spectral Averages using the Logger package in Triton (Scripps Whale Acoustics Lab, San Diego, CA) with user-defined settings.These data were recorded at SanctSound Site MB02_03 between August 23, 2019 and December 20, 2019.
Macrozooplankton Hydroacoustic Index Data from Prince William Sound, Alaska
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These data are part of the Gulf Watch Alaska (GWA) long term monitoring program, pelagic monitoring component. This dataset consists of one table, providing echointegration data of macrozooplankton from three regions of Prince William Sound, Alaska that typically contain foraging aggregations of humpback whales.
Macrozooplankton Hydroacoustic Index Data from Prince William Sound, Alaska
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One table, providing echointegration data of macrozooplankton from three regions of Prince William Sound, Alaska that typically contain foraging aggregations of humpback whales.