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YRC Baseline 9 Loci
TXT file of individual genotypes at 9 microsatellite loci. First row has the microsatellite loci names. Columns 1 and 2 are individual identifiers, followed by allele sizes for the 9 microsatellites, two alleles per locus.
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YRC Baseline 9 Loci
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TXT file of individual genotypes at 9 microsatellite loci. First row has the microsatellite loci names. Columns 1 and 2 are individual identifiers, followed by allele sizes for the 9 microsatellites, two alleles per locus.
YRC Baseline 4 Loci
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TXT file of individual genotypes at 4 microsatellite loci. First row has the microsatellite loci names. Columns 1 and 2 are individual identifiers, followed by allele sizes for the 4 microsatellites, two alleles per locus.
YRC 13 Loci SPM
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BSE file of allele counts by population for 13 loci derived from the two individual genotype files (YRC baseline 4loci.txt and YRC baseline 9loci.txt).
Dictionary of Microsatellite Loci from the U.S. Geological Survey, Alaska Science Center, Molecular Ecology Laboratory
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This data package provides a dictionary of microsatellite locus primers used by the USGS Alaska Science Center, Molecular Ecology Laboratory (MEL). It is a look-up file of microsatellite locus names and citations to the original publication or source where additional information about the locus primers may be found.
Microsatellite genotypes for coastal cactus wrens (Campylorhynchus brunneicapillus) from Southern California, 2009-2019
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These data show multilocus genotypes, banding age, and territory for coastal cactus wrens (Campylorhynchus brunneicapillus) sampled in coastal Southern California between 2009 and 2019.
Microsatellite genetic marker genotypes from southern mule deer (Odocoileus hemionus fuliginatus) sampled in San Diego County, California
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Collection of microsatellite genetic data from multiple projects involving southern mule deer (Odocoileus hemionus fuliginatus) in San Diego County, California. Samples were collected 2005-2007, 2010, 2012-2013, 2015, and 2018-2020.
Shannon Dillon - OzWheat V1.0 SNP data assets
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Single nucleotide polymorphism genotypes for ~300 varieties from the OzWheat diversity panel generated with alternative platforms combined in a single matrix. Original platform source files are also provided. Transcript SNPs: 63,222 SNP loci. 298 wheat lines. File=OzWheat_Transsnp_filtered_CS1.0_231130.hmp.txt 90K Illumina SNP array: 23362 SNP loci. 286 wheat lines from OzWheat panel 1 and 300 lines from OzWheat panel 2. File=V1_V2_commonSNP_merged.hmp 40K Illumina SNP array: 10670 SNP loci. 286 wheat lines. File=OW1_40K_filtered.hmp.txt DARTseq: 56467 SNP loci. 282 wheat lines. File=Report_DW21-6152_SNP_mapping_2.csv Combined platform SNP - joins SNPs called from transcriptome data, 90K and 40K array and DARTseq. 115,260 SNP loci. 296 wheat lines. File=OzWheat_Transsnp40k90kDArT_filtered_CS1.0_alleleinfo_240102.hmp.txt Keeble-Gagnère G, Pasam R, Forrest KL, et al. Novel Design of Imputation-Enabled SNP Arrays for Breeding and Research Applications Supporting Multi-Species Hybridization. Front Plant Sci. 2021;12:756877. Published 2021 Dec 22. doi:10.3389/fpls.2021.756877
Sample collection information and microsatellite data for Northern Black Swifts in 6 colonies across Colorado, New Mexico and Idaho
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This dataset contains sample collection information and microsatellite genotype data for Northern Black Swifts in 6 colonies across Colorado, New Mexico and Idaho. This data was collected to examine levels of genetic diversity and connectivity among Black Swift colonies and also to assess parentage at a subset of those sites. This study helps clarify the breeding system of the Black Swift and is the first study to determine parentage of a subset of offspring using molecular methods.
Microsatellite CONVERT Input File
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Microsatellite data formatted for the software CONVERT, which includes dataset numerical IDs, sampling site names, and locus identifiers. Rows 291-294 provides information about the allele size ranges and repeat motif for each locus. Missing data are coded as ?.
Microsatellite genotypes for Light-footed Ridgway's rail (Rallus obsoletus levipes) sampled in southern California
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The dataset includes the coordinates, collection year, age, band number, studbook number, and 54 microsatellite genetic markers for 186 individual light-footed Ridgway's rails, Rallus obsoletus levipes.