The aims of this project are: (1) to identify and simulate key physical factors that have significant impacts on ecological processes on shelf and coastal areas of southwestern Western Australia (WA); and (2) to develop physical, ecological, and risk assessment models that can be used to assess impacts of multiple human use on coastal and shelf environments. The project consists of five main components: analysis of large scale climate forcing, development and application of regional and coastal circulation models, development of integrated biogeochemical/ecological models, development of coastal impact models, and risk assessment. This project will link existing field data, field observations from other SRFME projects, and output from new and existing models, with management objectives and needs defined by Western Australian stakeholders. Specific models to be developed include regional and coastal oceanographic models, biogeochemical / ecological models that links physical and ecological processes, and risk assessment models that link these models to human use of the marine environment. The project intends to build on methods and models already developed and/or used by other CMR projects such as the NWSJEMS and LWRDDC projects. These models will be adapted and extended to allow assessment of impacts of multiple use and natural forcing on nutrient cycling, production and habitat quality on shelf and coastal areas in southwestern WA. These tools will range from process-based simulation models to semi-empirical models, with a focus on making efficient use of existing data, and incorporating new data from large-scale observations such as acoustic and satellite data. The main deliverables of the project include analysis of large scale climate forcing, development and application of regional and coastal scale oceanographic, integrated biogeochemical/ecological, and coastal impact models and risk assessment methods.

The aim of the project is to examine how climate forcing influences nutrient, plankton and nekton dynamics across the continental shelf off Perth, Western Australia, with application to fisheries, management of marine protected areas and coastal processes. Objectives are: - Describe onshore-offshore biophysical ocean structure, its seasonal cycle and interannual variability based on remote sensing data and monitoring of temperature, salinity, nutrients, phytoplankton (chlorophyll and other pigments) and zooplankton based on monthly sampling off Hillarys; micronekton from quarterly cruises. - Measure primary productivity and parameters related to zooplankton grazing and productivity and food web links for key zooplankton species at selected stations/productivity regimes. - Use Hillarys transect temperature and chlorophyll data for validation of satellite derived surface temperatures and ocean colour (linkage with coastal project). - Apply acoustic methods to monitor zooplankton and micronekton and assess fine-scale distributions based on Tracor Acoustic Profiling System (TAPS) (6 frequencies, 300 kHz - 3 megaHz) and underway 38 and 120kHz frequencies; assess zooplankton and micronekton scattering strength and develop multi-frequency discrimination methods; - Explore optimised long term biophysical sampling strategies using remote sensing, acoustics and associated environmental variables for moored and other long-term monitoring linking process understanding with the numerical and empirical modelling. - Measure currents at a mooring site at 80 m depth off Perth and provide the data and oceanic process understanding for the numerical models. - Assess diet and nutritional status of western rock lobster phyllosoma with lipid biomarkers. - Input data and collaborate in development of biophysical NPZ models for coastal zone and shelf (modelling project); preliminary modelling of micronecton/necton.

Deterioration of coastal marine and estuarine habitats is inevitable in areas where human development is active. This is particularly the case in New South Wales (and throughout Australia) where a very large proportion of the population live on the edges of the coast-line. To sustain biodiversity and to maintain ecological processes and functions (for its own sake or for anthropocentric, human reasons), it will be necessary, for a very long time, to recreate, rebuild or repair habitats (Programme 3: Restoration of Disturbed Coastal Habitats). The science of restoration of coastal habitats is virtually unknown, and there is no sensible theory or understanding of how to create habitat that develops ecological function and maintains natural biodiversity. Most projects on restoration of habitat have unclear or no defined aims. Where there are clear aims, it is unusual, if not rare, to find any assessment of whether the aims are being achieved. The Centre for Research on Ecological Impacts of Coastal Cities (EICC)'s research in the area of ecology includes development and testing of protocols to allow assessment of the progress and achievements of programmes of restoration. This is complex because, like assessments of impacts, any actual restoration must be detectable against large natural variation in numbers and types of animals and plants from place to place and time to time. Also, the goals of restoration cannot depend on vague hopes of "restoring a balance" when it is known there is no "balance" to restore. So, sampling and experimental design, logical structures for statistical analysis and interpretation of results must all be developed, tested and improved. The EICC has generated many scientific papers and theses from research projects on the development and testing of protocols to allow assessment of the progress and achievements of programs of restoration. The link to the URL provided in this record provides a link to this research.

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Jurien Bay. The Jurien Bay marine environment is highly diverse, and is home to a wide variety of species, including sea lions and sea birds on the many offshore islands. Limestone reef and seagrass habitats in the area support a diverse fish and invertebrate fauna, and a local crayfishing industry is based around the Western Rock Lobster (Panulirus cygnus).

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project B4 - "Underpinning the repair and conservation of Australia’s threatened coastal-marine habitats". For specific data outputs from this project, please see child records associated with this metadata. The primary objective of this project is to provide essential research to underpin restoration efforts to increase the success and efficiency of shellfish and saltmarsh repair. The secondary objective is to quantify clear easily understood benefits of repair to further increase groundswell, Indigenous and interest group support for repair efforts. For Phase 2 this involves: Shellfish reefs 1. Providing critical research to underpin the success of companion works investments into Sydney rock oyster (Saccostrea glomerata) restoration in Qld and NSW 2. Ongoing engagement with Indigenous groups, focused around especially SEQ and NSW to match the emphasis on Sydney rock oyster; 3. Through the Nature Conservancy, linking to shellfish restoration works in Port Phillip Bay (Vic), St Vincent’s Gulf (SA) and Oyster Harbour (WA) so that a National Business Case complete with examples of successes to date can be developed; 4. Underpinning this succinct business case with an information base for any follow-on activities such as assessment of shellfish reefs as an endangered community. Salt marshes 1. Estimating the benefits of salt marsh repair for an easily publicly understood indicator - prawn species. 2. Undertaking this work in NSW and Qld in parallel with proposed repair works so that very concrete case studies are available to demonstrate the benefits of repair. Planned Outputs Shellfish reef project outputs: • A scientific paper published in an eminent, peer-reviewed journal describing the ecology and biodiversity of shellfish reefs and biodiversity comparison against other marine habitats; • A scientific paper published in an eminent, peer-reviewed journal which identifies trajectories of change from past baselines to current condition and develops achievable targets for repair; • News stories, web articles, social media, brochures and oral presentations at national/international conferences, which communicate the key research findings to coastal stakeholders such as fishers, divers, NRM groups and government agencies; • News stories, web articles and social media which communicate the importance of shellfish reefs and shellfish food sources to Indigenous Australians; • Summary of community benefit and business propositions for coastal wetland repair expanding on the vision of a rejuvenated coastal ecology and written at the level required for input to various investors, agencies and public policy; • Updates at the end of 2016 as part of stakeholder engagement and continued communication. Salt marsh prawn productivity outputs: • A scientific paper published in an eminent, peer-reviewed journal quantifying and contrasting prawn productivity in healthy and degraded salt marsh communities in tropical and temperate environments; • Publicly accessible communication resources (brochures, social media, media releases and webpages) which articulate simply the prawn productivity values of salt marshes and links this to the need for the protection, conservation and restoration of degraded salt marsh communities.

This record provides an overview of the scope and research output of NESP Marine Biodiversity Hub Project D1 - "Ecosystem understanding to support sustainable use, management and monitoring of marine assets in the North and North-west regions". For specific data outputs from this project, please see child records associated with this metadata. Effective management of marine assets requires an understanding of ecosystems and the processes that influence patterns of biodiversity. Focusing on the North and North-west regions, this project will leverage previous research to improve ecosystem understanding through a synthesis of existing information and by making testable predictions about the character and extent of conservation values, including for key ecological features (KEFs) and Commonwealth Marine Reserves. End-users and stakeholders will benefit from improved regional descriptions of marine ecosystems and uncertainty statements. In turn, this will inform prioritisation of future investments in monitoring marine ecosystems and State of the Environment reporting. Planned Outputs • A report on the synthesis (based on collations completed in 2015) of datasets and models for the North and NW identifying areas of greatest information coverage, gaps and themed to CMRs and KEFs in those regions. This report will also describe key spatial patterns in biodiversity (benthic and pelagic) and associations between benthic environments, fish and megafauna and large scale processes (e.g. oceanography). • Predictions and related products (maps) of the spatial distribution of biodiversity across the Oceanic Shoals CMR that encompasses benthic habitat, pelagic and demersal fish and megafauna communities. This will provide an example/test case at the National Prioritisation Workshop of how confidently predictive modelling can be used to describe assets and values in data poor areas to inform management and monitoring. • An updated conceptual model of ecosystem processes (benthic and pelagic) within the Oceanic Shoals CMR based on extension of modelling into pelagics. • A review of existing knowledge of the Ancient Coastline KEF. • A qualitative model of Glomar Shoal KEF (to be confirmed in consultation with DOE). • Communication products that capture activities and general interest stories of scientific results disseminated through NW Atlas social media links. • Upload of new relevant spatial data layers in NW Atlas for management and planning, and engagement with end users to maximize uptake of the NW Atlas products.

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Point Ann, a site which lies within the Fitzgerald Biosphere, a UNESCO designated International Biosphere Reserve and one of the largest and biologically significant National Parks in Australia (DEC) on West Australia’s south coast, approximately 180km east of Albany.

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Middle Island, the project's easternmost site located within the Recherche Archipelago. The Recherche Archipelago provides habitats for a diverse range of both terrestrial and marine species, and can be accessed either by vessel from the town of Esperance, or by four wheel drive along the coastal roads adjoining the Cape Arid National Park.

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Geographe Bay in the southwest Capes region. The marine environment at this location varies from extensive seagrass meadows in protected waters, to kelp-dominated granite and limestone reefs in areas of high wave energy. A small number of corals are also found throughout the region, reflecting the influence of the southward flow of the Leeuwin Current. The fish fauna is also diverse, with a high proportion of endemic species.

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Rottnest Island, a popular family holiday destination just 20 km off the Perth coast. One of the main drawcards of the island is the diverse marine life inhabiting the surounding waters, which Western Australian locals and tourists can experience by snorkelling, diving, boating and fishing. The marine environment around Rottnest includes seagrass meadows, kelp-covered reef tops, coral patches, and sponge gardens in deeper water. As a result of the warm, southward flowing Leeuwin Current, the island represents the southern limit of the distributions of many tropical corals and fish. The marine life around Rottnest therefore represents a unique mix of tropical and temperate species and habitats.