This project has been designed to provide the Western Australian Government and its agencies with improved understanding of the coastal marine environment so that its decision making with regard to development in this zone is environmentally credible and sustainable. The project will deliver this result by the following sequence of research. First, existing data will be appraised in light of a simple system model for inshore coastal waters. This rudimentary understanding will be used to design environmental surveys for three representative coastal systems (chosen in consultation with WA departments and agencies). Whereupon, baseline data will be obtained on biodiversity, biogeochemical processes and environmental quality in these waterways. With this information, the research will then move on to consider the affects of selected stressors (localised sources and diffuse inputs) on the above ecological characteristics, and the potential for irreversible alteration. Where necessary, focussed investigations in the field or laboratory will be used to resolve key mechanisms and also the scale of response. Important outcomes for the project will be the development of validated environmental indicators for the use of coastal managers, and also other resources for them to better understand the complex interactions and inter-relations in coastal marine ecosystems (e.g. via conceptual models). This project will also work with other SRFME projects to improve capacity for prediction and scenario testing in environmental decision making via models and other tools.

The aim of the project is to examine how climate forcing influences nutrient, plankton and nekton dynamics across the continental shelf off Perth, Western Australia, with application to fisheries, management of marine protected areas and coastal processes. Objectives are: - Describe onshore-offshore biophysical ocean structure, its seasonal cycle and interannual variability based on remote sensing data and monitoring of temperature, salinity, nutrients, phytoplankton (chlorophyll and other pigments) and zooplankton based on monthly sampling off Hillarys; micronekton from quarterly cruises. - Measure primary productivity and parameters related to zooplankton grazing and productivity and food web links for key zooplankton species at selected stations/productivity regimes. - Use Hillarys transect temperature and chlorophyll data for validation of satellite derived surface temperatures and ocean colour (linkage with coastal project). - Apply acoustic methods to monitor zooplankton and micronekton and assess fine-scale distributions based on Tracor Acoustic Profiling System (TAPS) (6 frequencies, 300 kHz - 3 megaHz) and underway 38 and 120kHz frequencies; assess zooplankton and micronekton scattering strength and develop multi-frequency discrimination methods; - Explore optimised long term biophysical sampling strategies using remote sensing, acoustics and associated environmental variables for moored and other long-term monitoring linking process understanding with the numerical and empirical modelling. - Measure currents at a mooring site at 80 m depth off Perth and provide the data and oceanic process understanding for the numerical models. - Assess diet and nutritional status of western rock lobster phyllosoma with lipid biomarkers. - Input data and collaborate in development of biophysical NPZ models for coastal zone and shelf (modelling project); preliminary modelling of micronecton/necton.

This project seeks to address NRP Project F: Integration for management through: #(i) Development of integrated data products and modelling frameworks relating ecological and socio-economic processes in the Ningaloo region. These products and tools will be designed to support assessment of risks associated with human uses (e.g. recreational fishing) and environmental trends (e.g. climate change) in the region. They will also be used to evaluate existing and alternative management strategies in terms of identified management objectives. #(ii) Leadership and coordination of integrated reports summarising and linking findings across the NRP and CSIRO Ningaloo Cluster, with an emphasis on relevance to management. #The funding request from NRP is $450K, which will be matched by approximately $450K in-kind from CSIRO and the University of Western Australia. Further budgetary details are provided below.

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Mount Gardner, a site located just off Two People’s Bay, 30km east of the town of Albany. The area is host to a number of human uses, including recreational and commercial fishing, diving, surfing, recreational boat use and shipping and mining. The marine environment at this location is different to the other three study locations on the south coast, in that it encompasses the protected Two Peoples Bay with seagrass and invertebrate communities and the more exposed rocky and macroalgal reefs around the Mt Gardner peninsula itself.

The high-level objective of Project 2 was to develop a range of interlinked models of the North West Shelf ecosystem which provide: An understanding of the links between the physical, chemical and biological environments, particularly with respect to primary producers, key species and habitat types; Predictions of the ecosystem response to natural forcing, including seasonal and interannual variability; Predictions of the effects of selected human uses on conservation and other values of the ecosystem, suitable for use in management strategy evaluation and risk assessment; and Identification of environmental quality indicators suitable for monitoring and use in adaptive management. Objectives of Task 2.6 (Trophic modelling) was: Evaluate spatial patterns of fishery production for the main commercial and recreational species, as well as their relationships with spatial patterns of physical variables, nutrients, primary and secondary production, and benthic habitat types. Provide coarse level trophic models support major trophic guilds involved with fishery production. Provide prediction of the impacts of management zoning and fishery targeting on fishery production by major guilds. 1. Prototype fisheries production and trophic models implemented for the coastal region from Exmouth to Port Hedland. 2. Fisheries production and trophic models implemented for the coastal region from Exmouth to Port Hedland. 3. Maps of fishery production and spatial distributions of relative abundance of key commercial fisheries, including relationships with physical factors, primary production, and benthic habitat types (used in Tasks 1.2, 1.3, 2.7, 4.2, 5.1, 5.2, 5.3 and by management agencies). 4. Food web diagrams indicating main trophic interactions and dynamical food web models for the region, including time series of biomass for the main trophic guilds (used in Tasks 1.2, 1.3, 2.7, 5.3, 5.4 and by management agencies). 5. Written report on Fishery Production and Links to Habitats and Food Web Dynamics including model documentation. 2 This report represents the food web dynamics component of these deliverables, i.e. the trophodynamics model implemented for the region from Exmouth Gulf to Port Hedland, food web diagrams, a dynamical food web model for the region including a time series of biomass for the main trophic guilds, and a written report on food web dynamics and model documentation.

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Middle Island, the project's easternmost site located within the Recherche Archipelago. The Recherche Archipelago provides habitats for a diverse range of both terrestrial and marine species, and can be accessed either by vessel from the town of Esperance, or by four wheel drive along the coastal roads adjoining the Cape Arid National Park.

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including the Abrolhos Islands, a group of 122 limestone outcrops surrounded by fringing reed ca. 60km west from the city of Geraldton. The Abrolhos research location is the most northerly of the Marine Futures sampling sites, selected due to the unique mixture of tropical coral reef habitats, and temperate reef and seagrass communities.The hydroacoustics data were processed to construct full coverage maps of bathymetry and textural information.

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Point Ann, a site which lies within the Fitzgerald Biosphere, a UNESCO designated International Biosphere Reserve and one of the largest and biologically significant National Parks in Australia (DEC) on West Australia’s south coast, approximately 180km east of Albany.

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Broke Inlet, a relatively remote area 400km south of Perth, between the towns of Augusta and Albany. The nearest major town, Manjimup, is situated 100km north and the small coastal settlement Windy Harbour approximately 30km west of Broke Inlet. The Inlet is entirely surrounded by the D’Entrecasteaux National Park, which is accessible via a sealed road and attracts limited ‘through-traffic’ to the area. The marine environment off Broke is one fairly untouched by major tourism pressures and thus this location was selected due to its relative inaccessibility.

The Marine Futures Project was designed to benchmark the current status of key Western Australian marine ecosystems, based on an improved understanding of the relationship between marine habitats, biodiversity and our use of these values. Approximately 1,500 km2 of seafloor were mapped using hydroacoustics (Reson 8101 Multibeam), and expected benthic habitats "ground-truthed" using towed video transects and baited remote underwater video systems. Both sources of information were then combined in a spatial predictive modelling framework to produce fine-scale habitat maps showing the extent of substrate types, biotic formations, etc. Surveys took place across 9 study areas, including Geographe Bay in the southwest Capes region. The marine environment at this location varies from extensive seagrass meadows in protected waters, to kelp-dominated granite and limestone reefs in areas of high wave energy. A small number of corals are also found throughout the region, reflecting the influence of the southward flow of the Leeuwin Current. The fish fauna is also diverse, with a high proportion of endemic species.