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Systemic production of grapevine phenolics in response to mixed infections by wood-colonizing fungi
,This data is collected from two experiments, one in 2018 and one in 2019, that left untreated or inoculated grapevines with Diplodia seriata, Neofusicoccum parvum, Phaeomoniella chlamydospora, or mock-inoculated, and then two months later inoculated with one of the three pathogens. Grapevine stem phenolic levels were measured at the time of the second inoculation on a different branch, and comparisons were made between pathogen infected plants or those left non-inoculated. Lesion sizes of the second inoculations also were compared to examine the effects on the first inoculation on these. Lesion lengths were measured in mm, and all phenolic compound levels were measured in mg/g FW amounts.,,
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Data From: Two Novel Species of Pestalotiopsis Fungi on Picea and Tsuga from Temperate Forests in the United States
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,In a 2023 survey evaluating conifers with Rosellinia infections, five Pestalotiopsis-like fungal endophytes were isolated from plant samples obtained from Maine, New Hampshire, and Ohio by The Mycology & Nematology Genetic Diversity & Biology Laboratory at the United States Department of Agriculture. The two data sets provided herein contain species-specific base pair substitutions for the partial translation elongation factor 1-alpha gene (TEF). In the alignments, the novel Pestalotiopsis fungi are compared to their most closely related species. The data set can be used as a diagnostic tool to differentiate between the closely related species.,DNA was extracted from fungal samples using the E.Z.N.A HP Plant & Fungal DNA Kit (OMEGA® Bio-Tek, Norcross, GA, USA) following manufacturer’s protocol. The TEF locus was amplified, and reactions were conducted in 25 μL volumes with 12.5 μL of KAPA2G Robust Hotstart® (Kapa Biosystems, Inc., Wilmington, MA, USA), 1.25 μL of the forward and reverse primers at 10 μM, 1-1.75 μL of DNA at 10-20 ng, and 8 μL of molecular grade H2O. Amplifications were performed following the protocol described by Maharachchikumbura et al. (2014) in a C1000 Touch PCR Thermal Cycler (Bio-Rad, Hercules, CA). PCR products were analyzed through capillary electrophoresis with the QIAxcel Advanced System instrument and the QIAxcel ScreenGel software (Qiagen, Hilden, Germany). PCR products were then purified using ExoSAP-IT Cleanup (Affymetrix, Santa Clara, CA) following the manufacturer’s protocol. The BigDye™ 3.1 Terminator Cycle sequencing kit was used to sequence amplicons bi-directionally with the Applied Biosystems SeqStudio Genetic Analyzer (Thermo Fisher Scientific, Waltham, MA, USA).,Resources in this dataset:,,,
Plant cover data collected on roadsides treated with herbicide and bioherbicide in SW Idaho
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The exotic grass-fire cycle is degrading semiarid rangelands, such as the vast areas of shrub-steppe in North America now invaded by fire-promoting cheatgrass. Chemical- or bio-herbicides are sprayed onto soils to inhibit the invaders, but information on chemical- or bio-herbicide effects on plant communities is limited. We asked how the plant community responded to the bioherbicide Pseudomonas fluorescens strain ACK55 (Battalion Pro®) in comparison to the separate and combined effects of the most conventional pre-emergent chemical herbicide, imazapic (Plateau®), in two cheatgrass-invaded sagebrush-steppe sites. Plant community responses are compared with soil microbial community responses in the Larger Work, and soil microbial data are available in GenBank. Plant community responses are compared with soil microbial community responses in the Larger Work, and soil microbial sequence data were deposited to the NCBI Short Read Archive (BioProject PRJNA1254875).
Native and Invasive Species Plant Growth and Mortality in Growth Media Inoculated with Bacteria Found on Phragmites From New Jersey (2016)
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Bacteria were isolated from seeds of non-native Phragmites australis (haplotype M) then representatives were evaluated for their capacities to become intracellular in root cells, and their effects on: 1.) germination rates and seedling growth, 2.) susceptibility to damping-off disease, and 3.) mortality and growth of competitor plant seedlings (dandelion (Taraxacum officionale F. H. Wigg) and curly dock (Rumex crispus L.)). The experiments included the following assessments of Phragmites-associated bacteria (Pseudomonas spp, strains Sandy LB4 (Pseudomonas fluorescens) and West 9 (Pseudomonas sp.)): capacity for plant growth promotion (using Poa annua seeds), Poa annua and Phragmites australis seed germination and seedling root architecture, disease protection (co-culture experiments with soil fungi), damping off disease control (with pathogen Fusarium oxysporum), and multiple competitor inhibition experiments (with Taraxacum officionale and Rumex crispus L.). In total, 10 laboratory experiments were performed, data from eight of which are recorded in this data release.
Native and Invasive Species Plant Growth and Mortality in Growth Media Inoculated with Bacteria Found on Phragmites From New Jersey (2016)
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Bacteria were isolated from seeds of non-native Phragmites australis (haplotype M) then representatives were evaluated for their capacities to become intracellular in root cells, and their effects on: 1.) germination rates and seedling growth, 2.) susceptibility to damping-off disease, and 3.) mortality and growth of competitor plant seedlings (dandelion (Taraxacum officionale F. H. Wigg) and curly dock (Rumex crispus L.)). The experiments included the following assessments of Phragmites-associated bacteria (Pseudomonas spp, strains Sandy LB4 (Pseudomonas fluorescens) and West 9 (Pseudomonas sp.)): capacity for plant growth promotion (using Poa annua seeds), Poa annua and Phragmites australis seed germination and seedling root architecture, disease protection (co-culture experiments with soil fungi), damping off disease control (with pathogen Fusarium oxysporum), and multiple competitor inhibition experiments (with Taraxacum officionale and Rumex crispus L.). In total, 10 laboratory experiments were performed, data from eight of which are recorded in this data release.