This study was based on the sediment quality triad (SQT) approach. A stratified probabilistic sampling design was utilized to characterize the Delaware Bay system in terms of chemical contamination, sediment toxicity (Microtox, amphipod bioassay; sea urchin gamete bioassay; and P450 biomarker) and benthic infaunal community structure. The purpose was to define the extent and magnitude of toxicity and other biological effects associated with contaminants in the Delaware estuary system from the fall line to the mouth of the Bay. This file contains data measured in the Delaware Bay Estuary and adjacent waters during 1997. Samples were collected for water and sediment analyses.

This study was based on the sediment quality triad (SQT) approach. A stratified probabilistic sampling design was utilized to characterize the Chesapeake Bay system in terms of chemical contamination, sediment toxicity (Microtox, amphipod bioassay; sea urchin gamete bioassay; and P450 biomarker) and benthic infaunal community structure. The purpose was to define the extent and magnitude of toxicity and other biological effects associated with contaminants in the mainstem Chesapeake estuary and major western subestuaries. This file contains data measured in the Chesapeake Bay estuary system sampled in 1998, 1999, and 2001. Samples were collected for sediment analyses.

This study was based on the sediment quality triad (SQT) approach. A stratified probabilistic sampling design was utilized to characterize the San Francisco Bay system in terms of chemical contamination, sediment toxicity (Microtox, amphipod bioassays; sea urchin gamete bioassay; and P450 biomarker) and benthic infaunal community structure. The purpose was to define the extent and magnitude of toxicity and other biological effects associated with contaminants in the San Francisco estuary system from the delta to the south Bay and out to the Golden Gate. This file contains data measured in the San Francisco Bay Estuary in 2000 and 2001. Samples were collected for water and sediment analyses.

This study was based on the sediment quality triad (SQT) approach. A stratified probabilistic sampling design was utilized to characterize the Kachemak Bay system in terms of chemical contamination, sediment toxicity and benthic infaunal community structure. The purpose was to define the extent and magnitude of toxicity and other biological effects associated with contaminants in the Kachemak Bay system. Five strata (Homer harbor, Western intertidal, Western subtidal, Eastern intertidal, and Eastern subtidal) were established in the shallow (less than 10 fathoms) northern area of the bay. Sediment samples were collected at multiple stations in each strata. A broad suite of sediment contaminants were analyzed at each station, including polynuclear aromatic hydrocarbons (PAHs), chlorinated pesticides including DDT and its metabolites, polychlorinated biphenyls (PCBs), trace elements, and butyl-tins Other parameters included grain size analysis, total organic/inorganic carbon (TOC/TIC), and percent solids. Characterization of infaunal assemblages and the abundance of organisms present in sediments provide additional information to help determine areas of degraded sediments. Whole sediment toxicity bioassays with two species of amphipod were conducted to test for overt contaminant toxicity. This project provides invaluable baseline data on sediment infauna species richness, chemical contamination and toxicity that is georeferenced and posted on the internet through the NOAA's National Status and Trends data portal.

A survey of the toxicity of sediments was performed by NOAA's National Status and Trends (NSandT) Program throughout the Hudson-Raritan Estuary. The objectives of the survey were to determine the spatial patterns of toxicity, the spatial scales (magnitude) of toxicity, the severity (frequency) of toxicity, and the relationships among measures of toxicity and chemical substances in the sediments. This survey was conducted as a part of a nationwide program supported by NOAA's Coastal Ocean Program and the NSandT Program, in which the biological effects of toxicants are determined in selected estuaries and bays. The survey was conducted in two phases: 117 samples were collected throughout the entire estuary during 1991 (Phase 1) and an additional 57 samples were collected in Newark Bay and vicinity during 1993 (Phase 2). Relatively sensitive toxicity tests were performed under controlled laboratory conditions with portions of each sample. During Phase 1, three independent tests were performed: (1) a 10-day, acute survival test of solid-phase sediments with the amphipod Ampelisca abdita; (2) a 48-hour liquid phase test of elutriates with the embryos of the bivalve Mulinia lateralis in which both percent survival and normal embryological development were recorded; and (3) a 15-minute microbial bioluminescence test (Microtoxtm) of organic solvent extracts. Only the amphipod tests were performed on the samples collected during Phase 2. Chemical analyses of selected samples were performed and the concentrations of trace elements, polynuclear aromatic hydrocarbons (PAHs), chlorinated pesticides and other hydrocarbons were reported. Also, during Phase 2 the concentrations of numerous chlorinated dioxins and furans were determined.

The toxicity of sediments in Biscayne Bay and many adjoining tributaries was determined as part of a bioeffects assessments program managed by NOAA's National Status and Trends Program. Biscayne Bay was selected by NOAA for this survey because data from the NSandT Mussel Watch Program and data from previous surveys of the bay had shown a potential for toxicity and other adverse biological effects. In addition, no bay-wide information had been generated on the toxicological condition of the bay sediments and several agencies had indicated a need for this type of data and a willingness to assist NOAA in collecting them. The study area was defined as extending from Dumbfoundling Bay at the north end to Little Card Sound at the south end, seaward to the barrier islands or reef, and landward to the shoreline or saltwater control structures. This area was determined to encompass a total of 484 kilometers of the sea floor. During 1995 and 1996, 226 samples were collected from randomly-chosen locations and tested for toxicity and analyzed for chemical concentrations. Data from these tests and analyses are included in the report. Samples for benthic community analyses were collected at one-third of the stations; however, data from those analyses are not included in the report but are available from NOAA's online database http://nbi.noaa.gov/data/. The survey was designed to characterize sediment quality throughout the greater Biscayne Bay area. Surficial sediment samples were collected during 1995 and 1996 from 226 randomly-chosen locations throughout nine major regions. Laboratory toxicity tests were performed as indicators of potential ecotoxicological effects in sediments. A battery of tests was performed to generate information from different phases (components) of the sediments. Tests were selected to represent a range in toxicological endpoints from acute to chronic sublethal responses. Toxicological tests were conducted to measure: reduced survival of adult amphipods exposed to solid-phase sediments; impaired fertilization success and abnormal morphological development in gametes and embryos, respectively, of sea urchins exposed to pore waters; reduced metabolic activity of a marine bioluminescent bacteria exposed to organic solvent extracts; induction of a cytochrome P-450 reporter gene system in exposures to solvent extracts; and reduced reproductive success in marine copepods exposed to solid-phase sediments. The full report is available online at http://ccma.nos.noaa.gov/about/coast/nsandt/download.aspx

Bioaccumulation dynamics of polychlorinated biphenyls (PCBs) and organochlorine pesticides was examined in young-of-the-year bluefish from seven sub-estuaries of New York Bight ecosystem.

This study was based on the sediment quality triad (SQT) approach. The purpose was to define the extent and magnitude of contamination and biological effects associated with contaminants in the Massachusetts/Cape Cod Bays, Stellwagen Bank, and Boston Harbor. A stratified probabilistic sampling design was utilized to characterize the systems in terms of chemical contamination and benthic infaunal community structure. In addition, samples were taken in the vicinity of the new Boston sewage outfall in Massachusetts Bay and in Boston Harbor where the sewage outfall used to discharge. Toxicity bioassays were not done. A secondary objective was to coordinate with the NOAA NMFS to collect sediment and fish tissue samples at previously sampled Benthic Surveillance Program sites. This file contains sediment and water data measured in all areas sampled in 2004.

A survey of sediment toxicity was carried out by NOAA's National Status and Trends Program in the coastal bays that surround Long Island Sound in New York and Connecticut. The survey objectives were to determine the spatial distribution and severity of toxicity, and to analyze the relationships between toxicity and chemical contamination in the sediments. Sediment samples from three stations in each of 20 coastal bays and one Long Island Sound site were tested for toxicity with three independent protocols: (1) a 10-day amphipod survival test of the whole, solid-phase sediments with Ampelisca abdita, (2) a 48-hour exposure of clam larvae, Mulinia lateralis, to sediment elutriates, with normal development and survival as the endpoints, and (3) a microbial bioluminescence test (MicrotoxR) using solvent extracts of the sediments. Separate samples from these same stations were analyzed chemically for a broad suite of potentially toxic contaminants, including heavy metals, polynuclear aromatic hydrocarbons (PAH), chlorinated pesticides and polychlorinated biphenyls. Additional sediment samples were obtained from up to six additional stations in a few of the coastal bays; these samples were examined only for heavy metals contamination and the data are included in an appendix to this report.The survey results indicate that sediment toxicity is widespread in the coastal bays of Long Island Sound. Significant toxicity was indicated for the sediments from at least one of the stations in each of the 20 coastal bays sampled in this survey. Manhassett Bay, Oyster Bay, and Little Neck Bay, New York were the three most toxic bays, respectively, as indicated by the incidence of significant toxicity from the three tests on samples from three stations. Only 11 of the 60 stations showed no significant toxicity in any of the three tests. Branford Harbor and the Connecticut River were indicated as the least toxic bays by this approach. About one-fifth of the total area (79.1 km2) sampled within the 20 embayments was indicated as significantly toxic by all three tests (survival of amphipods and larval bivalves, and MicrotoxTM).

The National Contaminant Biomonitoring Program (NCBP), which was developed and maintained by the U.S. Fish and Wildlife Service (FWS), monitored concentrations of environmental contaminants in freshwater fish over a period of about 20 years. Beginning in the 1960s as a component of the multi-agency National Pesticide Monitoring Program (NPMP) and continuing through the mid-1980s, freshwater fish were periodically collected from a national network of stations for analysis of pesticides, PCBs, and other contaminants. The NPMP/NCBP database of contaminant concentrations is the most extensive of its kind, unique in its breadth and depth with respect to environmental contaminant concentrations in fish. The data and information from the NCBP are sought often by a national and international clientele; especially frequent users are biologists in FWS field offices and USGS Water Science Centers. The fish network was suspended by FWS in 1986 pending development of the Biomonitoring of Environmental Status and Trends (BEST) program. The BEST program and the NPMP/NCBP database were transferred to the National Biological Survey/Service (NBS) in 1993. At that time ongoing studies by NBS Inventory and Monitoring (I and M) and the USGS National Water Quality Assessment Program (NAWQA) generated new data at NCBP sites. The database was subsequently (1996) transferred to USGS. The database derived from the NCBP is unique in its ability to characterize the exposure of free-ranging organisms, including threatened and endangered species, to toxic contaminants.