The Melampsora lini genome was sequenced to improve its genome assembly. PacBio HiFi and Hi-C data was generated as well as RNA-seq data.

This dataset was used as part of a continent-wide analysis of tree fecundity and its association with climate and tree size. This dataset consists of: plotinfo.csv, which contains basic attribute information for the field plots where the data were collected; seeddata.csv, which contains the data for seeds collected (how many, what type, etc.); trapxycoord.csv, which contains location and identification information for the seed traps used to collect the seeds; treexycoord.csv, which contains location and attribute information for the standing trees in the plot where the seeds were collected; and treedata.csv, which contains data on the size and species of standing trees in the plot where the seeds were collected.

버섯 유전자 전사체 분석 및 서열 배열 정보(유전체 염기서열 분석 및 각 염기서열의 기능 주석 작업을 통하여 주요 분자의 유전마커 확립을 위한 정보 제공)

,A high-quality reference genome is an essential tool for applied and basic research on arthropods. Long-read sequencing technologies may be used to generate more complete and contiguous genome assemblies than alternate technologies, however, long-read methods have historically had greater input DNA requirements and higher costs than next generation sequencing, which are barriers to their use on many samples. Here, we present a 2.3 Gb de novo genome assembly of a field-collected adult female Spotted Lanternfly (Lycorma delicatula) using a single PacBio SMRT Cell. The Spotted Lanternfly is an invasive species recently discovered in the northeastern United States, threatening to damage economically important crop plants in the region. The DNA from one individual female specimen collected in Reading, Berks County, Pennsylvania was used to make one standard, size-selected library with an average DNA fragment size of ~20 kb. The library was run on one Sequel II SMRT Cell 8M, generating a total of 132 Gb of long-read sequences, of which 82 Gb were from unique library molecules, representing approximately 38x coverage of the genome. The assembly had high contiguity (contig N50 length = 1.5 Mb), completeness, and sequence level accuracy as estimated by conserved gene set analysis (96.8% of conserved genes both complete and without frame shift errors). Further, it was possible to segregate more than half of the diploid genome into the two separate haplotypes. The assembly also recovered two microbial symbiont genomes known to be associated with L. delicatula, each microbial genome being assembled into a single contig. We demonstrate that field-collected arthropods can be used for the rapid generation of high-quality genome assemblies, an attractive approach for projects on emerging invasive species, disease vectors, or conservation efforts of endangered species.,Supporting files for the manuscript "A High-Quality Genome Assembly from a Single, Field-collected Spotted Lanternfly (Lycorma delicatula) using the PacBio Sequel II System", include several intermediate versions of the assembly (raw output from Falcon, raw output from Falcon unzip, etc.) as well as the final assembly primary contigs and haplotigs (for the regions of the genome that were phased).,,

These tables include data from 25 long-term forest plots located in either Sequoia or Yosemite national park. Trees in these plots (established between 1982 and 2001) are censused annually for mortality and measured for diameter every 4 to 6 years. Plots were mostly 1 hectare (ha) in size (range 0.9 – 2.5 ha) and contained at least two 25 by 25 meter seedling sub-plots to monitor natural seedling recruitment. The largest plot, at 2.5 ha, included four such seedling sub-plots. Each sub-plot was divided into 5 by 5 meter quadrats. In almost all the plots these seedling sub-plots were established in 1999, but four plots (those with names starting with FF) were added to the study in 2002 and seedling data was only available from this date. Seedlings taller than 10 centimeters (which were at least 3 years old) were given numbered tags so that their survival and height class could be recorded individually. If there were more than 20 seedlings per quadrat of a species entering the greater-than-10 centimeters category, a sample of 20 was tagged, but this was unusual. Individual-level mortality and growth could be tracked for these seedlings. In each annual seedling census, the presence of the tagged seedling (live or dead) was recorded and it was assigned to a height category (10-25 cm, 25-50 cm, 50-75 cm, 75-100 cm, and 100-137 cm). Those that grew to 137 centimeters (tall enough to record a diameter-at-breast height (DBH)) were re-tagged as trees. This release contains 2 CSV and 3 TXT files: TaggedSdl.txt, PlotInfogeneral.txt, quadrat_precise.csv, treedata.csv, and treeyears.txt.

,The Baylor College of Medicine recently sequenced and annotated the Leptinotarsa decemlineata genome as part of the i5k pilot project. This dataset presents the Leptinotarsa decemlineata genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. Assembly method details will be available in a forthcoming publication.,The Colorado potato beetle is considered the economically most significant defoliator of potato in northern latitudes worldwide. The range of this insect is continuing to expand, and it is likely to eventually colonize all potato-producing areas with temperate climate. Within it's native habitat, the beetle feeds on native solanaceous plants, S. angustifolium, S. elaeagnifolium, and buffalo bur, S. rostratum. However, it has adapted to potatoes and other solanaceous crops after its range expansion.,Due to the lack of any natural enemies that have been able to evolve seasonal adaptations, the cornerstone of Colorado potato beetle management has been the use of insecticides. However, the beetle has shown a remarkable ability to develop resistance to most insecticides used for its control. The mechanism(s) of insecticide resistance is yet unknown and genomic sequencing will lead to major advances in managing this pest in commercial plant production.,If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use,

● 데이터 키워드 - 유전체, 유전자, NGS, DNA ● 데이터 상품 요약 - 국내 식물 자생종과 동일한 종의 유전체 해독 원 데이터로부터 분석하여 얻어진 예측된 유전자 정보 ● 데이터 상품 정보 - 본 상품은 자생종 유전체 분석을 통해 얻어진 유전자의 유전자군 정보를 제공합니다. - 기능 도메인에 대해 기능별 유용성, 효소, 단백질, 병 저항성 유전자군 분류 가공 - 데이터 comparative analysis를 통해 유전자군별 발현 확률 및 계통 확률 계산 ● 컬럼 정보 - fasta format ● 활용 예제 - 본 데이터 상품을 활용하여 사용자는 다음과 같은 정보를 확인할 수 있습니다. 1) 신약 및 기능성 식품, 화장품 개발 관련 분야 기초자료 ● 데이터 상품 정보 - 2019년 7월 ~ 2019년 12월 [원본 데이터](https://www.bigdata-forest.kr/product/GNM100701)는 로그인 후 구매하여 다운로드 하십시오.

These data were converted from the originally delivered Microsoft Access PLOTs database from the Vegetation Mapping Inventory Project of Sequoia and Kings Canyon National Parks. These comma-delimited data tables contain(s) vegetation mapping plot classification and accuracy assessment data, as well as summary information about the data itself. If a table is empty, then it was empty in the original database.