Interlaboratory Performance and Quantitative PCR Performance Benchmarks for NIST SRM® 2917 Monitoring qPCR Assays

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qPCR assay interlaboratory measurements using NIST SRM 2917. This dataset is associated with the following publication: Sivaganesan, M., J. Willis, M. Karim, A. Babatola, D. Catoe, A.B. Boehm, M. Wilder, H. Green, A. Lobos, V.J. Harwood, S. Hertel, R. Klepikow, M.F. Howard, P. Laksanalamai, A. Roundtree, M. Mattioli, S. Eytcheson, M. Molina, M. Lane, R. Rediske, A. Ronan, N. D'Souza, J.B. Rose, A. Shrestha, C. Hoar, A.I. Silverman, W. Faulkner, K. Wickman, J.G. Kralj, S. Servetas, M.E. Hunter, S.A. Jackson, and O. Shanks. Interlaboratory performance and quantitative PCR data acceptance metrics for NIST SRM® 2917. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 225: 119162, (2022).

Performance of NIST SRM® 2917 with 13 Recreational Water Quality Monitoring qPCR Assays

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qPCR assay measurements using the pilot reference material and NIST SRM 2917. This dataset is associated with the following publication: Willis, J., M. Sivaganesan, R. Haugland, J. Kralj, S. Servetas, M.E. Hunter, S.A. Jackson, and O. Shanks. Performance of NIST SRM® 2917 with 13 Recreational Water Quality Monitoring qPCR Assays. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 212: 118114, (2022).

Performance of NIST SRM® 2917 with 13 Recreational Water Quality Monitoring qPCR Assays

공공데이터포털

qPCR assay measurements using the pilot reference material and NIST SRM 2917. This dataset is associated with the following publication: Willis, J., M. Sivaganesan, R. Haugland, J. Kralj, S. Servetas, M.E. Hunter, S.A. Jackson, and O. Shanks. Performance of NIST SRM® 2917 with 13 Recreational Water Quality Monitoring qPCR Assays. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 212: 118114, (2022).

Brumfield et al 20xx Data Set

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Log10 fecal score ratios for eligible microbial source tracking qPCR assays. This dataset is associated with the following publication: Brumfield, K.D., J.A. Cotruvo, O. Shanks, M. Sivaganesan, J. Hey, N.A. Hasan, A. Huq, R.R. Colwell, and M.B. Leddy. Metagenomic Sequencing and Quantitative Real-Time PCR for Fecal Pollution Assessment in an Urban Watershed. Frontiers in Water. Frontiers, Lausanne, SWITZERLAND, 3: 626849, (2021).

A fecal score approximation model for analysis of real-time quantitative PCR fecal source identification measurements

공공데이터포털

HF183/BacR287 qPCR standard control material and water sample measurements used to compare Bayesian and Traditional Fecal Score models. This dataset is associated with the following publication: Sivaganesan, M., J. Willis, A. Diedrich, and O. Shanks. A fecal score approximation model for analysis of real-time quantitative PCR fecal source identification measurements. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 255: 121482, (2024).

Full-Scale qPCR FSI in the Tillamook Bay Watershed April 2019

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Fecal source identification qPCR, land use, and weather data used in the manuscript entitled, "Large-Scale Implementation of Standardized Quantitative Real-Time PCR Fecal Source Identification Procedures in the Tillamook Bay Watershed". This dataset is associated with the following publication: Li, X., M. Sivaganesan, C. Kelty, A. Zimmer-Faust, P. Clinton, J. Reichman, Y. Johnson, W. Matthews, S. Bailey, and O. Shanks. Large-scale implementation of standardized quantitative real-time PCR fecal source identification procedures in the Tillamook Bay Watershed. PLoS ONE. Public Library of Science, San Francisco, CA, USA, 14(6): e0216827, (2019).

Full-Scale qPCR FSI in the Tillamook Bay Watershed April 2019

공공데이터포털

Fecal source identification qPCR, land use, and weather data used in the manuscript entitled, "Large-Scale Implementation of Standardized Quantitative Real-Time PCR Fecal Source Identification Procedures in the Tillamook Bay Watershed". This dataset is associated with the following publication: Li, X., M. Sivaganesan, C. Kelty, A. Zimmer-Faust, P. Clinton, J. Reichman, Y. Johnson, W. Matthews, S. Bailey, and O. Shanks. Large-scale implementation of standardized quantitative real-time PCR fecal source identification procedures in the Tillamook Bay Watershed. PLoS ONE. Public Library of Science, San Francisco, CA, USA, 14(6): e0216827, (2019).

Cao et al 20xx Data Set (Version 1)

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HF183/BacR287 qPCR data from standard curves and coastal water samples used to seed simulations in study. This dataset is associated with the following publication: Cao, Y., M. Sivaganesan, C. Kelty, D. Wang, A. Boehm, J. Griffith, S. Weisberg, and O. Shanks. A Human Fecal Contamination Score for Ranking Recreational Sites using the HF183/BacR287 Quantitative Real-Time PCR Method. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 128: 148-156, (2018).

Li et al 20xx Data set

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Data available in Science Hub includes measurements used to generate Figures 1, 2, S3, and S4. All other data is reported in the manuscript text. This dataset is associated with the following publication: Li, X., L. Peed, M. Sivaganesan, C. Kelty, C. Nietch, and O. Shanks. Evidence of Genetic Fecal Marker Interactions between Water Column and Periphyton in Artificial Streams. ACS Omega. American Chemical Society, Washington, DC, USA, 3(8): 10107-10113, (2018).

EPAdata MLS paper1

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EPA Draft Method C QPCR cycle threshold (Ct) measurements of standardized reference materials as described in D-EMMD-MEB-025-QAPP-01 and Journal article. This dataset is associated with the following publication: Sivaganesan, M., T. Aw, S. Briggs, E. Dreelin, A. Aslan, S. Dorevitch, A. Shrestha, N. Isaacs, J. Kinzelman, G. Kleinheinz, R. Noble, R. Rediske, B. Scull, S. Rosenberg, B. Weberman, T. Sivy, B. Southwell, S. Siefring, K. Oshima, and R. Haugland. Standardized data quality acceptance criteria for a rapid Escherichia coli qPCR method (Draft Method C) for water quality monitoring at recreational beaches. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 156: 456-464, (2019).