Performance of NIST SRM® 2917 with 13 Recreational Water Quality Monitoring qPCR Assays

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qPCR assay measurements using the pilot reference material and NIST SRM 2917. This dataset is associated with the following publication: Willis, J., M. Sivaganesan, R. Haugland, J. Kralj, S. Servetas, M.E. Hunter, S.A. Jackson, and O. Shanks. Performance of NIST SRM® 2917 with 13 Recreational Water Quality Monitoring qPCR Assays. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 212: 118114, (2022).

Interlaboratory Performance and Quantitative PCR Performance Benchmarks for NIST SRM® 2917 Monitoring qPCR Assays

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qPCR assay interlaboratory measurements using NIST SRM 2917. This dataset is associated with the following publication: Sivaganesan, M., J. Willis, M. Karim, A. Babatola, D. Catoe, A.B. Boehm, M. Wilder, H. Green, A. Lobos, V.J. Harwood, S. Hertel, R. Klepikow, M.F. Howard, P. Laksanalamai, A. Roundtree, M. Mattioli, S. Eytcheson, M. Molina, M. Lane, R. Rediske, A. Ronan, N. D'Souza, J.B. Rose, A. Shrestha, C. Hoar, A.I. Silverman, W. Faulkner, K. Wickman, J.G. Kralj, S. Servetas, M.E. Hunter, S.A. Jackson, and O. Shanks. Interlaboratory performance and quantitative PCR data acceptance metrics for NIST SRM® 2917. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 225: 119162, (2022).

Cao et al 20xx Data Set (Version 1)

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HF183/BacR287 qPCR data from standard curves and coastal water samples used to seed simulations in study. This dataset is associated with the following publication: Cao, Y., M. Sivaganesan, C. Kelty, D. Wang, A. Boehm, J. Griffith, S. Weisberg, and O. Shanks. A Human Fecal Contamination Score for Ranking Recreational Sites using the HF183/BacR287 Quantitative Real-Time PCR Method. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 128: 148-156, (2018).

Cao et al 20xx Data Set (Version 1)

공공데이터포털

HF183/BacR287 qPCR data from standard curves and coastal water samples used to seed simulations in study. This dataset is associated with the following publication: Cao, Y., M. Sivaganesan, C. Kelty, D. Wang, A. Boehm, J. Griffith, S. Weisberg, and O. Shanks. A Human Fecal Contamination Score for Ranking Recreational Sites using the HF183/BacR287 Quantitative Real-Time PCR Method. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 128: 148-156, (2018).

EPAdata MLS paper2

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EPA Draft Method C QPCR cycle threshold (Ct) measurements of standardized reference materials and blinded test samples as described in D-EMMD-MEB-025-QAPP-01 and Journal article. This dataset is associated with the following publication: Aw, T., M. Sivaganesan, S. Briggs, E. Dreelin, A. Aslan, S. Dorevitch, A. Shrestha, N. Isaacs, J. Kinzelman, G. Kleinheinz, R. Noble, R. Rediske, B. Scull, S. Rosenberg, B. Weberman, T. Sivy, B. Southwell, S. Siefring, K. Oshima, and R. Haugland. Evaluation of multiple laboratory performance and variability in analysis of recreational freshwaters by a rapid Escherichia coli qPCR method (Draft Method C). WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 156: 465-474, (2019).

EPAdata MLS paper2

공공데이터포털

EPA Draft Method C QPCR cycle threshold (Ct) measurements of standardized reference materials and blinded test samples as described in D-EMMD-MEB-025-QAPP-01 and Journal article. This dataset is associated with the following publication: Aw, T., M. Sivaganesan, S. Briggs, E. Dreelin, A. Aslan, S. Dorevitch, A. Shrestha, N. Isaacs, J. Kinzelman, G. Kleinheinz, R. Noble, R. Rediske, B. Scull, S. Rosenberg, B. Weberman, T. Sivy, B. Southwell, S. Siefring, K. Oshima, and R. Haugland. Evaluation of multiple laboratory performance and variability in analysis of recreational freshwaters by a rapid Escherichia coli qPCR method (Draft Method C). WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 156: 465-474, (2019).

Full-Scale qPCR FSI in the Tillamook Bay Watershed April 2019

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Fecal source identification qPCR, land use, and weather data used in the manuscript entitled, "Large-Scale Implementation of Standardized Quantitative Real-Time PCR Fecal Source Identification Procedures in the Tillamook Bay Watershed". This dataset is associated with the following publication: Li, X., M. Sivaganesan, C. Kelty, A. Zimmer-Faust, P. Clinton, J. Reichman, Y. Johnson, W. Matthews, S. Bailey, and O. Shanks. Large-scale implementation of standardized quantitative real-time PCR fecal source identification procedures in the Tillamook Bay Watershed. PLoS ONE. Public Library of Science, San Francisco, CA, USA, 14(6): e0216827, (2019).

Stachler et al. 2017 Figure 2 data

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Estimated mean log10 concentration of genetic markers for CQQ_056, CPQ_064, HF183/BacR287, and HumM2 genetic markers in nine sewage and two surface water samples. This dataset is associated with the following publication: Stachler, E., C. Kelty, M. Sivaganesan, X. Li, K. Bibby, and O. Shanks. Quantitative CrAssphage PCR Assays for Human Fecal Pollution Measurement. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 51(16): 9146-9154, (2017).

Stachler et al. 2017 Figure 2 data

공공데이터포털

Estimated mean log10 concentration of genetic markers for CQQ_056, CPQ_064, HF183/BacR287, and HumM2 genetic markers in nine sewage and two surface water samples. This dataset is associated with the following publication: Stachler, E., C. Kelty, M. Sivaganesan, X. Li, K. Bibby, and O. Shanks. Quantitative CrAssphage PCR Assays for Human Fecal Pollution Measurement. ENVIRONMENTAL SCIENCE & TECHNOLOGY. American Chemical Society, Washington, DC, USA, 51(16): 9146-9154, (2017).

Variable Fecal Source Prioritization in Recreational Waters Routinely Monitored with Viral and Bacterial General Indicators

공공데이터포털

Data used to generate Figures 1-5 in manuscript. This dataset is associated with the following publication: Li, X., C.A. Kelty, M. Sivaganesan, and O. Shanks. Variable Fecal Source Prioritization in Recreational Waters Routinely Monitored with Viral and Bacterial General Indicators. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 192: 116845, (2021).