,myPhyloDB is an open-source software package aimed at developing a user-friendly web-interface for accessing and analyzing all of your laboratory's microbial ecology data (currently supported project types: soil, air, water, microbial, and human-associated). The storage and handling capabilities of myPhyloDB archives users' raw sequencing files, and allows for easy selection of any combination of projects/samples from all of your projects using the built-in SQL database. The data processing capabilities of myPhyloDB are also flexible enough to allow the upload, storage, and analysis of pre-processed data or raw (454 or Illumina) data files using the built-in versions of Mothur and R. myPhyloDB is designed to run as a local web-server, which allows a single installation to be accessible to all of your laboratory members, regardless of their operating system or other hardware limitations. myPhyloDB includes an embedded copy of the popular Mothur program and uses a customizable batch file to perform sequence editing and processing. This allows myPhyloDB to leverage the flexibility of Mothur and allow for greater standardization of data processing and handling across all of your sequencing projects.,myPhyloDB also includes an embedded copy of the R software environment for a variety of statistical analyses and graphics. Currently, myPhyloDB includes analysis for factor or regression-based ANcOVA, principal coordinates analysis (PCoA), differential abundance analysis (DESeq), and sparse partial least-squares regression (sPLS).,,

,The ARS Culture Collection is one of the largest public collections of microorganisms in the world, containing approximately 93,000 strains of bacteria and fungi. The collection is split into subcollections of molds, prokaryotes, and yeasts. In addition, the online catalog is searchable by genus, species, subvar type, and subspecies.,The collection is housed within the Mycotoxin Prevention and Applied Microbiology Research Unit at the National Center for Agricultural Utilization Research in Peoria, Illinois. The scientists and staff of the ARS Culture Collection conduct and facilitate microbiological research that advances agricultural production, food safety, public health, and economic development. These goals are pursued through in-house research that improves understanding and utilization of microbiological diversity and through efforts to enhance the value and accessibility of microbial accessions in the Agricultural Research Service Culture Collection.,

,NOTE: Due to security issues, the ARSEF database search function is not currently available and we are transitioning to a site on the ARS-AZURE cloud. Please contact the curator (Kathryn.Bushley@usda.gov) if you need information about specific groups or a custom search of the database that can be sent via e-mail. Printed PDF catalogues of all isolates and other information about the collection are available on the ARSEF website at https://www.ars.usda.gov/northeast-area/ithaca-ny/robert-w-holley-center-for-agriculture-health/emerging-pests-and-pathogens-research/docs/mycology/,The Agricultural Research Service Collection of Entomopathogenic Fungal Cultures is the world's largest, most kaleidoscopic, and most comprehensive collection of living cultures of fungi that are pathogenic to or associated with insects, spiders, mites, ticks, and other invertebrates. Some isolates in the collection are not themselves invertebrate pathogens but are critically important for the improvements of taxonomies and systematics for the many diverse groups of fungi represented here. As of July 2016, ARSEF maintains more than 13000 isolates of more than 700 taxa of fungi isolated from 1300 hosts collected at more than 2400 locations on every continent.,The database is searchable by Fungi, Hosts, Locations, Provenance, or Accessions. Results are provided in PDF format.,Catalog files are in the Adobe Acrobat (PDF) format and are readable with the Adobe Acrobat Reader.,All catalogs and live searches of isolate data incorporate the most current supportable taxonomies for ARSEF fungi. Significant changes in the nomenclatural rules for many fungi have a large and ongoing impact on the entomopathogens in the order Hypocreales. These changes are discussed the introductory material in the catalogs.,If you are unsure about the most current identifications for isolates, online searches of ARSEF accessions return taxonomic information in the collection database at the moment of the search.,

,Our mission is to support application of low-input sustainable agriculture by: Providing, to the best of our ability, technical information about rhizobia, their preservation, and cultural and symbiotic characteristics; Acquiring and preserving the nitrogen-fixing bacterial symbionts of leguminous plants with the goal of maintaining widest possible genetic diversity; Maintaining quality control of new and existing germplasm by evaluation of microbiological purity and by examination of nodulation of the original trap host plant; Distributing cultures to the public and private sectors without charge for these services; Developing or adapting techniques in molecular biology for the determination of genetic diversity of rhizobia, to investigate interactions with their host plants and to identify novel characteristics; Acquiring, maintaining, evaluating quality, and distributing type strains for all the different taxa of nitrogen-fixing legume symbionts; Participating in the UNESCO program.,

The BioProject database links to data that have been or will be deposited into archival databases maintained at members of the International Nucleotide Sequence Database Consortium (INSDC, which comprises the DNA DataBank of Japan (DDBJ), the European Nucleotide Archive at European Molecular Biology Laboratory (ENA), and GenBank at the National Center for Biotechnology Information (NCBI)).

국립생태원에서 수행한 백두대간정밀조사 지의류 분야에서 조사되어 구축된 정보입니다. 지의류의 위치정보, 한글명, 학명이 포함되어 있습니다.

농업유전자원(식물, 미생물, 누에, 곤충, 표본, 이미지) 정보를 제공하며, 자원명, 학명, 자원구분 등의 입력 값으로 조회

국립낙동강생물자원관에서는 담수생물자원의 보존과 활용 촉진을 위해 분양 중인 담수생물자원 정보를 공공데이터로 개방하고 있습니다.개방 데이터는 자원번호, 학명, 국명, 분류체계, 기관명, 대구분, 중구분, 분류군, KTSN번호 등으로 구성되어 있습니다. 학계·연구기관은 담수생물자원의 분포 특성, 생물학적 다양성, 담수생물자원별 활용 가능성 등에 대한 분석을 통해 생물자원 연구 및 산업적 응용 가능성을 모색할 수 있습니다. 교육·문화기관은 해당 데이터를 생물자원 교육 콘텐츠 및 체험활동 자료로 활용함으로써 실질적이고 체감도 높은 교육 프로그램 운영에 기여할 수 있습니다. 지자체 및 관련 기관은 담수생물자자원의 지역별 분포 정보를 기반으로 지역 특화 산업 육성, 담수생물자원 기반 관광자원 개발, 협력 네트워크 구축 등에 활용할 수 있습니다

,Annotation data of genome assemblies of Streptomyces spp. isolated from agricultural soil.,,

야생동물질병관리시스템은 철새도래지, 강변 등을 중심으로 분변예찰을 수행합니다. 지방자치단체, 용역업체, 국립야생동물질병관리원 자체예찰 등으로 수집된 시료들을 야생동물질볃관리시스템을 통해 질병진단의뢰하며 이를 국립야생동물질병관리원이 검사하여 질병데이터를 수집합니다. "AI 예찰정보"는 각 시료에 부여된 번호에 따라 채취에 관한 정보(채취기관, 채취일자)와 질병검사에 관한 정보(선별검사확인일자, 양성·음성 등 병원성결과, 유전자형)와 같이 각종 정보가 제공됩니다.유전자형에 공란이 많은 이유는 고병원성·저병원성 양성결과에만 유전자형이 기록되며, 그 외 음성 등은 유전자형이 기록되지 않기 때문입니다.