Data from: Draft genome sequences of eight streptogramin-resistant Enterococcus species isolates from animal and environmental sources in the United States
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,Draft genome sequences of five Enterococcus faecium, two Enterococcus hirae, and one Enterococcus gallinarum from enviromental sources and chicken carcass rinsates. Isolates were selected for their resistance to the streptogramin antibiotic, Quinupristin-Dalfopristin and were all collected in the United States between 2001 and 2004. Antimicrobial resistance genes were identified conferring resistance to the macrolide-lincosamide-streptogramins, aminoglycosides, tetracycline, beta-lactams, and glycopeptides.,,
Complete Genome of Stachybotrys chartarum strain 51-11
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Complete genome sequence of the fungus Stachybotrys chartarum. Sequences can be used to identify genes, genetic pathways, gene clusters, genetic organization, etc. utilizing appropriate bioinformatics software. This dataset is associated with the following publication: Betancourt , D., T. Dean , J. Kim, and J. Levy. Genome sequence of Stachybotrys chartarum Strain 51-11. Genome Announcements. American Society for Microbiology, Washington, DC, USA, 3(6): 1114-1115, (2015).
Agricultural Research Service Culture Collection (NRRL - Northern Regional Research Laboratory) Database
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,The ARS Culture Collection is one of the largest public collections of microorganisms in the world, containing approximately 93,000 strains of bacteria and fungi. The collection is split into subcollections of molds, prokaryotes, and yeasts. In addition, the online catalog is searchable by genus, species, subvar type, and subspecies.,The collection is housed within the Mycotoxin Prevention and Applied Microbiology Research Unit at the National Center for Agricultural Utilization Research in Peoria, Illinois. The scientists and staff of the ARS Culture Collection conduct and facilitate microbiological research that advances agricultural production, food safety, public health, and economic development. These goals are pursued through in-house research that improves understanding and utilization of microbiological diversity and through efforts to enhance the value and accessibility of microbial accessions in the Agricultural Research Service Culture Collection.,
ARS Microbial Genomic Sequence Database Server
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,This database server is supported in fulfilment of the research mission of the Mycotoxin Prevention and Applied Microbiology Research Unit at the National Center for Agricultural Utilization Research in Peoria, Illinois. The linked website provides access to gene sequence databases for various groups of microorganisms, such as Streptomyces species or Aspergillus species and their relatives, that are the product of ARS research programs. The sequence databases are organized in the BIGSdb (Bacterial Isolate Genomic Sequence Database) software package developed by Keith Jolley and Martin Maiden at Oxford University.,
Data from: Development of a versatile resource from 1500 diverse genomes for post-genomics research
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,This data set contains 32 million annotated SNPs having an average SNP density of 30 SNPs per kb and 12 non-synonymous SNPs per gene model. These SNPs were identified from a genetically diverse, worldwide, collection of soybean germplasm representing wild, landrace, and improved cultivars. A combination of new and publicly available re-sequencing data was used in this analysis. The accession genotypes and their annotations are described in the manuscript titled: "Analysis and characterization of 1500 diverse genome sequences as a versatile resource for post-genomics research".,,
LTAR Upper Mississippi River Basin - Morris - Swan Lake Research Farm Phenocam
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,The PhenoCam network is collecting color and near infrared images year-round using cameras in fixed positions on agricultural lands including a site located on the Swan Lake Research Farm. The network effort was initiated in 2015 at this long-term, plot-scale research site. The camera at the research farm on focused a plot-scale, replicated research study that was established in 1997 to assess the long-term impacts of various tillage management options on soil organic carbon. Initially the study included eight tillage treatments: no-tillage, moldboard + disk tillage, chisel tillage, and fall and spring residue management, with or without strip-tillage and strip-tillage + sub-soiling. In 2004, the number of treatments were reduced to no-tillage, moldboard tillage, and fall and spring residue management without strip-tillage. All tillage treatments also had an early or late planting date. In 2008, the strip-tillage plots were modified to explore alternative strategies for supporting cellulosic bioenergy feedstock production, including planting of cellulosic feedstock. The modification included adding perennials grasses into an extended 6-year rotation, winter cereal rye cover crops in a corn-soybean rotation, and an alternative Sorghum-Sudan grass hybrid forage system. Detailed soil and crop properties data have been collected from this site. This site is designated to be continued as part of the LTAR "common experiment" comparing agricultural and environmental results from "business as usual" and "aspirational best practices.,