,Annotation data of genome assemblies of Streptomyces spp. isolated from agricultural soil.,,

Complete genome sequence of the fungus Stachybotrys chartarum. Sequences can be used to identify genes, genetic pathways, gene clusters, genetic organization, etc. utilizing appropriate bioinformatics software. This dataset is associated with the following publication: Betancourt , D., T. Dean , J. Kim, and J. Levy. Genome sequence of Stachybotrys chartarum Strain 51-11. Genome Announcements. American Society for Microbiology, Washington, DC, USA, 3(6): 1114-1115, (2015).

We collected data on tolerance using comparative approaches in a clade of mustards, emphasizing the variety of contexts in which damage is realistically tolerated. We estimated tolerance to leaf damage, tolerance to apical clipping at the bolting stage-- simulating browsing--, and resistance to a specialist and generalist lepidopteran herbivore for a group of native mustards, grown in field soils unique to each population and in a common potting soil.

,Meta-data from over 100 studies that examined induction of plant phenolic compounds following colonization by insects or microbial organisms (both pathogens and beneficials). This meta-data was used in a meta-analysis to observe that both insects and microbes consistently induce phenolic production. The meta-data covers publications that range from 2008 to 2017.,,

,Draft genome sequences of five Enterococcus faecium, two Enterococcus hirae, and one Enterococcus gallinarum from enviromental sources and chicken carcass rinsates. Isolates were selected for their resistance to the streptogramin antibiotic, Quinupristin-Dalfopristin and were all collected in the United States between 2001 and 2004. Antimicrobial resistance genes were identified conferring resistance to the macrolide-lincosamide-streptogramins, aminoglycosides, tetracycline, beta-lactams, and glycopeptides.,,

Excel files containing raw data used to generate figures throughout manuscript. This dataset is associated with the following publication: Dean , T., D. Betancourt , J. Kim, L. Harvey, A. Evans, and B. Grace. Biological Responses of Raw 264.7 Macrophage Exposed to Two Strains of Stachybotrys chartarum Spores Grown on Four Different Wallboard Types. INHALATION TOXICOLOGY. Taylor & Francis, Inc., Philadelphia, PA, USA, 28(7): 303-307, (2016).

,This Ag Data Commons submission includes the 94 sunflower paired-end sequencing FASTQ files, the corresponding 16S bacterial FASTQ files, and other relevant data to the study described below:,Host-microbe interactions are increasingly recognized as important drivers of organismal health, growth, longevity, and community-scale ecological processes. However, less is known about how genetic variation affects hosts' associated microbiomes and downstream phenotypes. We demonstrate that sunflower Helianthus annuus harbors substantial, heritable variation in microbial communities under field conditions. We show that microbial communities co-vary with heritable variation in resistance to root infection caused by the necrotrophic pathogen Sclerotinia sclerotiorum, and that plants grown in autoclaved soil showed almost complete elimination of pathogen resistance. Association mapping suggests at least 59 genetic locations with effects on both microbial relative abundance and Sclerotinia resistance. Although the genetic architecture appears quantitative, we have elucidated previously unexplained genetic variation for resistance to this pathogen. We identify new targets for plant breeding and demonstrate the potential for heritable microbial associations to play important roles in defense in natural and human-altered environments.,See README for details of each table in the spreadsheet and related information.,

These are the efficacy data for each test conducted in study. Data are presented for Bacillus atrophaeus and B. anthracis in colony forming units, for positive controls and for CFU recovered after decontamination. Log reduction calculations are also included, as well as data on temperature and relative humidity. This dataset is associated with the following publication: Richter, W., M. Sunderman, Z. Willenberg, M. Calfee, S. Serre, and J. Wood. Effectiveness of Formaldehyde in Various Soil Types as a Wide Area Decontamination Approach for Bacillus anthracis Spores. PLOS ONE. Public Library of Science, San Francisco, CA, USA, e0277941, (2022).