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Meta-data for Phenolic Compound Induction in Plant-Microbe and Plant-Insect Interactions
,Meta-data from over 100 studies that examined induction of plant phenolic compounds following colonization by insects or microbial organisms (both pathogens and beneficials). This meta-data was used in a meta-analysis to observe that both insects and microbes consistently induce phenolic production. The meta-data covers publications that range from 2008 to 2017.,,
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Data from: Microbial volatile organic compounds mediate attraction by a primary but not secondary stored product insect pest in wheat
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,This dataset is associated with the forthcoming publication entitled, "Microbial volatile organic compounds mediate attraction by a primary but not secondary stored product insect pest in wheat", and includes data on grain damage from near infrared spectroscopy, behavioral data from wind tunnel and release-recapture experiments, as well as volatile characterization of headspace from moldy grain. For all files, incubation intervals 9, 18, and 27 d represent how long grain was incubated after being tempered to a grain moisture of 12, 15, or 19% or left untempered (ctrl; 10.8% grain moisture). TSO = Trece storgard oil; empty = negative control (no stimulus), LGB = lesser grain borer (Rhzyopertha dominica), and RFB = red flour beetle (Tribolium castaneum).,Note: The resource 'GC/MS Grain MVOC Headspace Data' was added 2021-08-04 with the deletion of some compounds as unlikely natural compounds and potential contaminants. This is the dataset that undergirds the non-metric multidimensional scaling analysis.,See the included file list for more information about methods and results of each file in this dataset.,,
Data from: Attraction, mobility, and preference by Lasioderma serricorne (F.) (Coleoptera: Ptinidae) to microbially-mediated volatile emissions by two species of fungi in stored grain
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,Our goals were to 1) isolate, and culture two fungal morphotypes, 2) characterize the volatile emissions from grain inoculated by each fungal morphotype (Aspergillus flavus or Fusarium spp.) compared to uninoculated and sanitized grain, and 3) understand how MVOCs from each morphotype affects mobility, attraction, and preference by L. serricorne. Headspace collection revealed that the Fusarium- and A. flavus-inoculated grain produced significantly different volatiles compared to sanitized grain or the positive control. Changes in MVOC emissions affected close-range foraging during an Ethovision assay, with a greater frequency of entering and spending time in a small zone with kernels inoculated with A. flavus compared to other treatments. In the release-recapture assay, MVOCs were found to be attractive to L. serricorne at a longer distances in commercial pitfall traps. While there was no preference shown among semiochemical stimuli in a still-air, four-way olfactometer, it is possible that methodological limitations prevented robust interpretation from this assay. Overall, our study suggests that MVOCs are important for close- and long-range orientation of L.serricorne during foraging, and that MVOCs may have the potential for inclusion in behaviorally-based tactics for this species.,
Data from: Immediate and delayed movement of resistant and susceptible adults of Tribolium castaneum (Herbst) (Coleoptera: Tenebrionidae) after short exposures to phosphine
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,The aim of the current study was to track the movement of phosphine-resistant and -susceptible adults of the red flour beetle, Tribolium castaneum (Herbst) (Coleoptera: Tenebrionidae), which is a major pest of stored products, after brief exposures to phosphine. Exposures were followed for extended intervals to assess the recovery patterns, and how those patterns are related to known resistance to phosphine. A video-tracking procedure coupled with Ethovision software was used to assess movement after exposure.,Two strains of T. castaneum were used, one susceptible and one resistant to phosphine. The susceptible T. castaneum strain had been maintained in continuous culture without any known exposure to phosphine for >30 years at the USDA-ARS Center for Grain and Animal Health Research (CGAHR), in Manhattan, KS, USA. The phosphine-resistant strain of T. castaneum was collected from wheat in Palmital, Brazil during 1988 (BRZ-5). The rearing media consisted of 95% organic, unbleached, wheat flour plus 5% brewer's yeast. Tribolium castaneum were reared under laboratory conditions of 27.5°C, and 65% relative humidity (R.H.), 14:10 L:D. Adults, of mixed sex and <1 month old, were used in the exposure bioassays.,The protocol that was used in our bioassays to generate phosphine was the Phosphine Tolerance Test (Detia Degesch GmbH, Laudenbach, Germany) with some modifications, as performed by Agrafioti et al. 2021. In particular, the phosphine was generated within a plastic canister (5 L capacity) by adding 50 mL of water to two kit magnesium phosphide pellets. The concentration of phosphine gas inside the plastic canister was determined by using several dosimeter Draeger glass tubes (Draeger 25A, 0–10 000 ppm, Draeger Safety AG & Co., USA). Ten adults of each strain were placed in a plastic syringe of 100 mL with separate syringes used for each species and strain. Then, a specific gas quantity was removed from the canister with the syringe and blended with fresh air to produce a 100-mL volume with a concentration of either 1000 or 3000 ppm and compared to phosphine-free controls (0 ppm). The insects inside the syringe were held at the concentrations above for a 5 min exposure, while additional syringes containing only fresh air and insects were used as negative controls.,To understand the propensity for movement after a 5 min phosphine exposure, a video-tracking procedure was used. After exposure of phosphine-resistant or phosphine-susceptible T. castaneum for 5 min, adult movement was evaluated immediately after exposure or 24 h later under the same environmental chamber conditions as the colonies (see Source Insects), but held without supplemental food. Movement was recorded for 3 h immediately after phosphine exposure but binned into 30 min intervals (e.g., 0–30, 30–60, 60–120, 120–150, and 150–180 min) in order to evaluate how movement varied over the measured time period. Movement was also recorded 24 h after exposure for periods of 1 h (binned by 30 min intervals). Movement measures of adults was tracked in six replicate Petri dishes (90 × 15 mm D:H) with a piece of filter paper (85 mm D, Grade 1, GE Healthcare, Buckinghamshire, United Kingdom) lining the bottom using a network camera (GigE, Basler AG, Ahrenburg, Germany) affixed 80 cm above the dishes. The Petri dishes were backlit using a LED light box (42 × 30 cm W:L, LPB3, Litup, Shenzhen, China) to increase contrast and affixed in place with white foam board with holes specifically cut to size for the petri dishes. Video was streamed to a nearby computer and processed in Ethovision (v. 14.0.1322, Noldus Inc., Leesburg, VA). The software was used to calculate the total distance moved (cm) and the mean instantaneous velocity (cm/s) for each adult. Each adult was considered a replicate and was never used more than once. Only adults classified as alive (normal movement speed and activity), or affected (sluggish movements or on back with legs twitching) were used in this assay.
Chemical Footprints Mediate Habitat Selection in Co-occurring Aphids - Aphids Density Data
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The record contains information on the number of aphids and chemical footprints of two aphid species. The data was collected in field and laboratory trials, we first examined how plant microsites alter fitness by measuring the fecundity of each species. Next, we tested whether intra- and interspecific pre-inhabitation modify habitat selection in two aphid species. Then we conducted laboratory trials showed that R. maidis displaced R. padi. Through gas chromatography-mass spectrometry analysis and bioassays testing the effects of aphid density and footprint extracts, we found a density-dependent response, with R. padi avoiding locations previously inhabited by R. maidis. Chemical analysis of footprint crude extracts showed a highly abundant compound, 1-hexacosanol, and when presented as the synthetic form also elicited R. padi displacement.
Data from: Responses to environmental variability by herbivorous insects and their natural enemies within a bioenergy crop, Miscanthus x giganteus
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,Description: This dataset consists of field data (arthropods, nematodes and NDVI) collected over the course of 6 field excursions in 2015 and 2016 near TyTy, GA, in a field used for growing Miscanthus x giganteus. It also includes interpolated values of soil measurements collected in 2015 and meteorological data collected on an adjacent farm. Point-in-time measurements include all meteorological, NDVI, arthropod and nematode measurements and their derivatives. Fixed values were measurements that were held constant across all sampling dates, including location, terrain and soils measurements and their derivatives.,Dawn Olson and Jason Schmidt collected and processed arthropod count data. Jason Schmidt collected and processed spider count data and computed spider diversity. Richard Davis collected and processed nematode count data. Alisa Coffin collected and processed NDVI data and positional locations. Tim Strickland collected and processed soils data and Alisa Coffin interpolated soils values using kriging to derive values at arthropod sample locations. David Bosch collected and processed meteorological data. Lynne Seymour provided statistical expertise in deriving any estimated values (phloem feeders, parasitoids, spiders, and natural enemies). Alisa Coffin derived terrain data (elevation, slope, aspect, and distances) from publicly available datasets, transformed values (SI, WI, etc), carried out the geographically weighted regression analysis and calculated C:SE values, harmonized the full dataset, and compiled it using Esri's ArcGIS Pro 2.5. Methods for most data are published in the accompanying paper and associated supplements.,Questions about dataset development and management should be directed to Alisa Coffin (alisa.coffin@usda.gov). This work was accomplished as a joint USDA and University of Georgia project funded by a cooperative agreement (#6048-13000-026-21S). This research was a contribution from the Long-Term Agroecosystem Research (LTAR) network. LTAR is supported by the United States Department of Agriculture.,At request of the author, the data resources are under embargo. The embargo will expire on Fri, Jan 01, 2021.,
Data from: Tephritid fruit fly gut bacterial population and community dynamics following adult emergence
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,Data include microbial count data (CFUs), 16S-rRNA copy number data (qPCR), and microbial community (microbiome) data from the guts of the invasive tephritid fruit flies, melon fly (Zeugodacus cucurbitae) and medfly (Ceratitis capitata).,Resources in this dataset:,
Data from: Bacteria in the genus Streptomyces are effective biological control agents for management of fungal plant pathogens - a meta-analysis
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,These data represent a meta-analysis testing if Streptomyces biological control agents reduce disease caused by fungal plant pathogens and identify factors that alter biological control efficacy of these bacteria. Meta-data and control and treatment data were compiled from 160 studies representing 44 publications that tested the effect of Streptomyces on diseases caused by fungal plant pathogens of agronomic and horticultural crops. Effect sizes and variances were calculated based on the log-response ratio.,,
How do Plant-Microbial Interactions Influence Plasticity Under Novel Temperature Conditions?
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Field Methods: We propose to explore the effects of plant-microbial interactions on plasticity in flowering time and growth of populations from a broad latitudinal gradient. We will conduct experiments examining plasticity in these traits in response to temperature using Eastern Monkeyflowers (Mimulus alatus and Mimulus ringens) and their root microbial symbionts. We will collect one to two fruits per plant from up to 15 individuals per site, and we will sample from up to three sites within each of the North Carolina State Parks listed. In addition, we will collect up to six soil cores (2.5 x 30 cm) from each site. We will restrict our sampling to slopes of 15% or greater. Both Mimulus ringens and alatus are species of least concern, and our collection methods will not adversely affect these population’s survival or growth. We will collect fruits, seeds and soil cores between July 1 and August 31, 2019. The following members of the Sheth Laboratory will participate in collection: Erin Coughlin, Rachel Wooliver and Seema Sheth. Funding for this study has been requested by Rachel Wooliver from the National Science Foundation through a Postdoctoral Research Fellowship in Biology grant proposal, which is currently pending approval (Proposal # 1906426).
Data from: Niche partitioning and coexistence of parasitoids of the same feeding guild introduced for biological control of an invasive forest pest
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,The data set is collected to evaluate if two parasitoids (Spathius galinae and Tetrastichus planipennisi), introduced for biocontrol of the invasive emerald ash borer (EAB), Agrilus planipennis, into North America have established niche-partitioning, co-existing populations following their sequential or simultaneous field releases to 12 hard-wood forests located in Midwest and Northeast regions of the United States. Ash trees of various sizes (large, pole-size and saplings) were debarked meter by meter in early spring of 2019 (Michigan sites) or fall of 2019 (Northeast states: Connecticut, Massachusetts and New York). Detailed data collection procedures can be found in the associated publication in Biological Control.,,