This data release contains model outputs depicting the probability of an H5 or H7 avian influenza outbreak at any given point in the continental United States for each week of the year.

This data release provides the predicted proportion of birds testing positive for IAV for each species at weekly intervals for each county centroid in the continental United States. This data supports a paired USGS publication.

This data release provides the predicted proportion of birds testing positive for IAV for each species at weekly intervals for each county centroid in the continental United States. This data supports a paired USGS publication.

This data set describes genomic sequence information from 2022 used to infer spatiotemporal trends pertaining to the introductions of highly pathogenic H5N1 avian influenza viruses into Alaska and spread among wild birds, backyard poultry, and mammals.

Wild waterfowl (family Anatidae) are reported as secondary transmitters of HPAIV and primary reservoirs for low-pathogenic avian influenza viruses, yet spatial inputs for disease risk modeling for this group have been lacking. Using geographic information software and Monte Carlo simulations, we developed geospatial indices of waterfowl abundance at 1 km resolutions for the breeding and wintering seasons for China, the epicenter of H5N1. Two types of spatial layers were developed: cumulative waterfowl abundance (WAB), a measure of predicted abundance by species, and cumulative abundance weighted by H5N1 prevalence (WPR), whereby abundance for each species was adjusted based on species specific prevalence values. Spatial patterns of the model output differed between seasons, with higher WAB and WPR in the northern and western regions of China for the breeding season and in the southeast for the wintering season. Uncertainty measures indicated highest error in southeastern China for both WAB and WPR.

Clade 2.3.4.4b Eurasian-origin H5N1 entered North America in late 2021 and spread across the continent. While studies have characterized the antibody response mounted by dabbling ducks following exposure, little data is available for diving ducks. This study sought to identify influenza A virus (IAV) infection and antibodies in Lesser and Greater Scaup captured in Maryland, Illinois, and Rhode Island. In Maryland, IAV seroprevalence increased from the 2021/2022 to 2022/2023 sampling season, with IAV antibody prevalence increasing for juvenile (38% to 80%) and adult (82% to 90%) Lesser Scaup. While adult Lesser Scaup sampled in Illinois in 2021/2022 had IAV antibody prevalence comparable to those sampled in Maryland (76% and 82%, respectively), they had higher antibody prevalence to both H5 (48% and 18%) and N1 (68% and 35%), potentially due to being sampled in March versus December and January. Greater Scaup captured in Rhode Island had comparable IAV, H5, and N1 antibody seroprevalence to Lesser Scaup in Maryland during the same season. Our data suggest that Lesser Scaup had limited antibodies to highly pathogenic H5 IAV prior to the introduction of clade 2.3.4.4b H5N1 to North America, but relevant antibodies were widely observed in the months and year following.

These data describe the creation, execution, and results of an effort to model the risk of avian influenza transmission across the wild waterfowl - domestic poultry interface at weekly intervals for the contiguous United States.

These data describe the creation, execution, and results of an effort to model the risk of avian influenza transmission across the wild waterfowl - domestic poultry interface at weekly intervals for the contiguous United States.

This dataset includes epidemiology, clinical signs, gross and microscopic pathology, and virology data from two red foxes (Vulpes vulpes) and one fisher (Pekania pennanti) submitted to the USGS-National Wildlife Health Center for cause-of-death determination and confirmed positive for highly pathogenic avian influenza (HPAI) H5N1 by USDA’s National Veterinary Services Laboratories. The foxes were juveniles from North Dakota and the fisher was an adult from Wisconsin. Clinical signs included neurological deficits such as ataxia, lethargy, or paralysis. Gross and microscopic lesions included myocardial pallor, pulmonary and hepatic congestion, meningoencephalitis, interstitial pneumonia, myocardial necrosis, and hepatic necrosis. Highly pathogenic avian influenza H5N1 2.3.4.4 was detected in swabs and/or organ tissues by PCR; genotype B3.1 was identified in the foxes and B3.2 was identified in the fisher. Death of all three animals was attributed to HPAI.

This dataset includes epidemiology, clinical signs, gross and microscopic pathology, and virology data from two red foxes (Vulpes vulpes) and one fisher (Pekania pennanti) submitted to the USGS-National Wildlife Health Center for cause-of-death determination and confirmed positive for highly pathogenic avian influenza (HPAI) H5N1 by USDA’s National Veterinary Services Laboratories. The foxes were juveniles from North Dakota and the fisher was an adult from Wisconsin. Clinical signs included neurological deficits such as ataxia, lethargy, or paralysis. Gross and microscopic lesions included myocardial pallor, pulmonary and hepatic congestion, meningoencephalitis, interstitial pneumonia, myocardial necrosis, and hepatic necrosis. Highly pathogenic avian influenza H5N1 2.3.4.4 was detected in swabs and/or organ tissues by PCR; genotype B3.1 was identified in the foxes and B3.2 was identified in the fisher. Death of all three animals was attributed to HPAI.