Draft genome sequence of two Shingopyxis sp. strains H107 and H115 isolated from a chloraminated drinking water distriburion system simulator. This dataset is associated with the following publication: Gomez-Alvarez, V., S. Pfaller , and R. Revetta. Draft Genome of Two Sphingopyxis sp. Strains, Dominant Members of the Bacterial Community Associated with a Drinking Water Distribution System Simulator. Genome Announcements. American Society for Microbiology, Washington, DC, USA, 4(2): e00183-16, (2016).

Draft genome sequences of six Mycobacterium immunogenum strains isolated from a chloraminated drinking water distribution system simulator subjected to changes in operational parameters. This dataset is associated with the following publication: Gomez-Alvarez, V., and R. Revetta. Draft Genome Sequences of Six Mycobacterium immunogenum, Obtained from a Chloraminated Drinking Water Distribution System Simulator. Genome Announcements. American Society for Microbiology, Washington, DC, USA, 4(1): e01538-15, (2016).

The Whole Genome Shotgun project has been deposited in DDBJ/ENA/GenBank under the BioProject PRJNA487286 with the following accession numbers CP061840 (chromosome) and CP061841 (plasmid). The raw sequence reads have been submitted to the NCBI SRA under the accession numbers SRR13076822 and SRR13076823. This dataset is associated with the following publication: Gomez-Alvarez, V., L. Boczek, I. Raffenberg, and R. Revetta. Closed Genome and Plasmid Sequences of Legionella pneumophila AW-13-4, Isolated from a Hot Water Loop System of a Large Occupational Building. Microbiology Resource Announcements. American Society for Microbiology, Washington, DC, USA, 10(1): e01276-20, (2021).

Whole-genome sequences of four strains closely related to members of the Mycobacterium chelonae group, isolated from biofilms in a drinking water distribution system simulator. This dataset is associated with the following publication: Gomez-Alvarez, V., and R. Revetta. Whole-Genome Sequences of Four Strains Closely Related with Members of the Mycobacterium chelonae group, Isolated from Biofilms in a Drinking Water Distribution System Simulator. Genome Announcements. American Society for Microbiology, Washington, DC, USA, 4(1): 1-2, (2016).

The fasta files (Genome_Set01.zip) contain the reference-assisted de novo assemblies (as contigs) of seven Legionella pneumophila subps. pneumophila isolates. The table contains rows as isolates (yellow) and columns as attributes (green) for each individual genome. This dataset is associated with the following publication: Gomez-Alvarez, V., L. Boczek, D. King, A. Pemberton, S. Pfaller, M. Rodgers, J. Santodomingo, and R. Revetta. Draft Genome Sequences of Seven Legionella pneumophila Isolates from a Hot Water System of a Large Building. Microbiology Resource Announcements. American Society for Microbiology, Washington, DC, USA, 8(18): e00384-19, (2019).

The fasta files (Genome_Set01.zip) contain the reference-assisted de novo assemblies (as contigs) of seven Legionella pneumophila subps. pneumophila isolates. The table contains rows as isolates (yellow) and columns as attributes (green) for each individual genome. This dataset is associated with the following publication: Gomez-Alvarez, V., L. Boczek, D. King, A. Pemberton, S. Pfaller, M. Rodgers, J. Santodomingo, and R. Revetta. Draft Genome Sequences of Seven Legionella pneumophila Isolates from a Hot Water System of a Large Building. Microbiology Resource Announcements. American Society for Microbiology, Washington, DC, USA, 8(18): e00384-19, (2019).

The raw sequencing data for this study have been deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB40814 with the following BioSample numbers: SAMEA7465213 (sample DWDS A1), SAMEA7465214 (DWDS A2), SAMEA7465217 (DWDS B1), SAMEA7465218 (DWDS B2), SAMEA7465220 (DWDS C1), SAMEA7465221 (DWDS C2), SAMEA7465222 (DWDS D1), SAMEA7465223 (DWDS D2), SAMEA7465226 (DWDS E1), and SAMEA7465226 (DWDS E2). This dataset is associated with the following publication: Tiwari, A., V. Gomez-Alvarez, S. Siponen, A. Sarekoski, A. Hokajärvi, A. Kauppinen, E. Torvinen, I.T. Miettinen, and T. Pitkänen. Bacterial Genes Encoding Resistance against Antibiotics and Metals in Well-Maintained Drinking Water Distribution Systems in Finland. Frontiers in Microbiology. Frontiers, Lausanne, SWITZERLAND, 12: 803094, (2022).

The raw sequencing data for this study have been deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB40814 with the following BioSample numbers: SAMEA7465213 (sample DWDS A1), SAMEA7465214 (DWDS A2), SAMEA7465217 (DWDS B1), SAMEA7465218 (DWDS B2), SAMEA7465220 (DWDS C1), SAMEA7465221 (DWDS C2), SAMEA7465222 (DWDS D1), SAMEA7465223 (DWDS D2), SAMEA7465226 (DWDS E1), and SAMEA7465227 (DWDS E2). This dataset is associated with the following publication: Gomez-Alvarez, V., S. Siponen, A. Kauppinen, A. Hokajarvi , A. Tiwari, A. Sarekoski, I.T. Miettinen, E. Torvinen, and T. Pitkanen. A comparative analysis employing a gene- and genome-centric metagenomic approach reveals changes in composition, function, and activity in waterworks with different treatment processes and source water in Finland. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 229: 119495, (2023).

These data describe microbiological analyses performed on groundwater samples from domestic drinking water supply collected from 42 groundwater wells in the Central Valley of California. Samples were collected between January 2014 and April 2014 for the Groundwater Ambient Monitoring and Assessment (GAMA) program priority basin assessment of the Madera, Chowchilla, and Kings (MACK) groundwater sub-basins’ shallow aquifers. A total of 75 wells were sampled for the MACK study unit between August 2013 and April 2014. Samples for this dataset were vacuum filtered and plated on MI and mEI agars prior to incubation to promote colony growth. Colonies were tallied by their species into columns for various fecal indicator bacteria (FIBs): total coliforms (TCs), Escherichia coli (E. coli), enterococci. Non-target growths were also counted and tallied. Six additional replicate samples were collected for quality assurance. Of the 579 total FIB colonies detected, 106 were selected for polymerase chain reaction (PCR) analysis with the goal of sequencing their DNA. Selected colonies consisted of both target and non-target growths and were taken from 14 samples collected at 13 different wells. DNA sequencing was successful for 34 of the sampled colonies out of a total of 59 submitted. Results for these analyses were reported in FASTA format with the number of bases and their starting position indicated for each batch.

These data describe microbiological analyses performed on groundwater samples from domestic drinking water supply collected from 42 groundwater wells in the Central Valley of California. Samples were collected between January 2014 and April 2014 for the Groundwater Ambient Monitoring and Assessment (GAMA) program priority basin assessment of the Madera, Chowchilla, and Kings (MACK) groundwater sub-basins’ shallow aquifers. A total of 75 wells were sampled for the MACK study unit between August 2013 and April 2014. Samples for this dataset were vacuum filtered and plated on MI and mEI agars prior to incubation to promote colony growth. Colonies were tallied by their species into columns for various fecal indicator bacteria (FIBs): total coliforms (TCs), Escherichia coli (E. coli), enterococci. Non-target growths were also counted and tallied. Six additional replicate samples were collected for quality assurance. Of the 579 total FIB colonies detected, 106 were selected for polymerase chain reaction (PCR) analysis with the goal of sequencing their DNA. Selected colonies consisted of both target and non-target growths and were taken from 14 samples collected at 13 different wells. DNA sequencing was successful for 34 of the sampled colonies out of a total of 59 submitted. Results for these analyses were reported in FASTA format with the number of bases and their starting position indicated for each batch.