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Freshwater mussel environmental DNA (eDNA)
These data represent environmental DNA detections of freshwater mussels in the Green River, KY, USA; West Virginia long-term water quality monitoring sites, USA; and the Chesapeake Bay and Potomac basin, Maryland, USA. “This research dataset has been reviewed in accordance with U.S. Environmental Protection Agency (U.S. EPA), Office of Research and Development, and approved for release. Mention of brand names or vendors does not constitute an endorsement of products or services by the U.S. EPA.”"
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연관 데이터
Metabarcoding data from freshwater mussel eDNA collected in Clinch River, Virginia 2017
공공데이터포털
Data from metabarcoding assays to detect a suite of mussel species using mitochondrial DNA regions of the cytochrome c oxidase subunit I (COI) and NADH dehydrogenase subunit (ND1) genes sequences.
Metabarcoding data from freshwater mussel eDNA collected in Clinch River, Virginia 2017
공공데이터포털
Data from metabarcoding assays to detect a suite of mussel species using mitochondrial DNA regions of the cytochrome c oxidase subunit I (COI) and NADH dehydrogenase subunit (ND1) genes sequences.
Development, testing and use of four species-specific qPCR assays for freshwater mussel eDNA detection in the Niobrara River
공공데이터포털
This data consists of information on the specificity and sensitivity of 4 species specific qPCR assays for the detection of eDNA from 4 species of freshwater mussels, specifically Lampsilis cardium, Lampsilis siliquoidea, Pyganodon grandis, and Anodontoides ferussacianus. The data also contain the results of eDNA sampling in Niobrara River at Niobrara National Scenic River and Agate Fossil Beds National Monument for detection of these 4 species.
Development, testing and use of four species-specific qPCR assays for freshwater mussel eDNA detection in the Niobrara River
공공데이터포털
This data consists of information on the specificity and sensitivity of 4 species specific qPCR assays for the detection of eDNA from 4 species of freshwater mussels, specifically Lampsilis cardium, Lampsilis siliquoidea, Pyganodon grandis, and Anodontoides ferussacianus. The data also contain the results of eDNA sampling in Niobrara River at Niobrara National Scenic River and Agate Fossil Beds National Monument for detection of these 4 species.
Development and optimization of species-specific qPCR assays for eDNA detection of the mucket (Ortamannia ligamentina) and spectaclecase (Cumberlandia monodonta) mussels’ male mitotype
공공데이터포털
This dataset describes the sensitivity (limit of detection and limit of quantification) and specificity (list of species tested against the assays) of two qPCR assays designed to detect the male mitotype of two freshwater mussel species Ortmanniana ligamentina and Cumberlandia monodonta from water samples (eDNA).
Development and optimization of species-specific qPCR assays for eDNA detection of the mucket (Ortamannia ligamentina) and spectaclecase (Cumberlandia monodonta) mussels’ male mitotype
공공데이터포털
This dataset describes the sensitivity (limit of detection and limit of quantification) and specificity (list of species tested against the assays) of two qPCR assays designed to detect the male mitotype of two freshwater mussel species Ortmanniana ligamentina and Cumberlandia monodonta from water samples (eDNA).
National Status and Trends: Mussel Watch Program - Resurrection Bay Database
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In response to the growing concerns among Native communities about the safety of subsistence shellfish, this project assessed the health risks associated with consuming softshell clams, mussels and cockles. The aforementioned shellfish were collected in traditional harvest area in Resurrection Bay, AK and analyzed for contaminant body burdens and for occurrences of pathogens and diseases. A broad suite of contaminants were analyzed including 55 Polycyclic Aromatic Hydrocarbons (PAHs) , 27 chlorinated pesticides including DDT and its break-down products, 37 Polychlorinated Biphenyls (PCBs), 16 major and trace elements (Ag, Al, As, Cd, Cr, Cu, Fe, Hg, Mn Ni, Pb, Sb, Se, Sn and Zn), and tributyl-tin and its break-down products. The health of the subsistence shellfish were further characterized based on the presence an array of about 30 parasite taxa (e.g. bucephalus, chlamydia, ciliates, cestodes and nematodes) and occurrence of 11 diseases (e.g. MSX, tumors, neoplasm, edema and necrosis), which were quantified using prevalence and intensity computation. Results indicated that: - A great variation in metal body burdens among the different subsistence shellfish studied. Mercury was measured in all shellfish, but with the maximum value (0.2 ppm) found in blue mussels. Maximum tissue concentration for toxic metals such as chromium and Nickel were recorded in cockles. Maximum values for cadmium were found in mussels and softshell clams, while that of lead was found in the blue mussels. - Organic contaminants were detected in all subsistence shellfish although many of these compounds were banned more than three decades ago. - Metal and organic contaminant body burden were in general very low relatively to U.S. Food and Drug Administration guidelines for seafood safety. - Among the parasites assessed only large gill ciliates, small gill ciliates and gut rickettsia were detected in clam and blue mussels. - Among the bivalve diseases and tissue pathologies characterized in this study, digestive tubule atrophy was the most prevalent with 100% occurrence in cockles and mussels and about 96% in clams. Disease, such as ceroid bodies and histological condition such as diffuse and focal inflammations were also measured, but at relatively lower count than the digestive track atrophy. - In general, all infections and tissue pathology in the shellfish were minor and the conditions do not appear to be either a threat to the health of the shellfish or to humans that consume them. As a part of this study interspecies concentration factors (ICFs) that relate chemical concentrations in mussels to those in subsistence shellfish, were determined. The intent is to use ICFs as factor to evaluate contaminant concentrations in a wide range of Alaskan shellfish based upon measurements obtained for one species, thereby eliminating the need to monitor all species. Concentration values for many compounds were low or not detected, but where possible ICFs were calculated. This project provides invaluable baseline chemical body burden data on shellfish species that is geo-referenced and posted on the internet through the NOAA's National Status and Trends data portal.
Method comparison for the detection of environmental DNA from three species of unionid mussels in a mesocosm
공공데이터포털
Data describe a mesocosm study for the detection of mucket (Ortmanniana ligamentina), fatmucket (Lampsilis siliquoidea), and giant floater (Pyganodon grandis) freshwater mussel environmental DNA (eDNA). Water samples were collected on two different days in September of 2022 from a CERC pond containing O. ligamentina, L. siliquoidea, and P. grandis then analyzed for the presence of eDNA. Three different collection methods were performed: (1) 50 milliliter samples which were centrifuged, decanted, and concentrated pellet suspended for analysis; (2) 1.0 um mixed cellulose ester (MCE) membranes were used to filter sample material; and (3), 1.2 um polyethersulfone (PES) membranes were used to filter sample material. Parameters described in this data release include qPCR results and associated quality assurance measurements from the mesocosm water samples.
Environmental DNA results from dreissenid mussel early detection surveys in Montana, Minnesota, and Wisconsin 2017-2018
공공데이터포털
Positive and negative dreissenid mussel DNA quantitiative PCR results from environmental DNA water samples collected in Montana, Wisconsin and Minnesota to assess if environmental DNA can extend the seasonal window for dreissenid mussel early detection.
Environmental DNA results from dreissenid mussel early detection surveys in Montana, Minnesota, and Wisconsin 2017-2018
공공데이터포털
Positive and negative dreissenid mussel DNA quantitiative PCR results from environmental DNA water samples collected in Montana, Wisconsin and Minnesota to assess if environmental DNA can extend the seasonal window for dreissenid mussel early detection.