Gomphid DNA sequence data
공공데이터포털
DNA sequence data for several genetic loci. This dataset is not publicly accessible because: It's already publicly available on GenBank. It can be accessed through the following means: GenBank/NCBI (http://www.ncbi.nlm.nih.gov/). Accession numbers KX890490-KX891168. Format: This dataset is DNA sequence data. It is available in GenBank. Accession numbers KX890490-KX891168. This dataset is associated with the following publication: Ware, J., E. Pilgrim, M. May, N. Donnelly, and K. Tennessen. Phylogenetic relationships of North American Gomphidae and their close relatives. Systematic Entomology. John Wiley & Sons, Inc., Hoboken, NJ, USA, 42(2): 347-358, (2017).
BBGD454: an Online Database for Blueberry Genomic Data Transcriptome analysis of Blueberry using 454 EST sequencing
공공데이터포털
,NOTE: This dataset is no longer publicly available.,This database houses over 500,000 sequences that were generated and assembled into approximately 15,000 contigs, annotated and functionally mapped to Gene Ontology (GO) terms.,Blueberry (Vaccinium corymbosum) is a major berry crop in the United States. Next generation sequencing methodologies, such as 454, have been demonstrated to be successful and efficient in producing a snap-shot of transcriptional activities during an organism’s developmental stage(s) or its response to biotic or abiotic stresses. Such application of this new sequencing technique allows for high-throughput, genome-wide experimental verification of known and novel transcripts. We have applied a high-throughput pyrosequencing technology (454 EST sequencing) for transcriptome profiling of blueberry during different stages of fruit development to gain an understanding of the genes that are up or down regulated during this process. We have also sequenced flower buds at four different stages of cold acclimation to gain a better understanding of the genes and biochemical pathways that are up- or down-regulated during cold acclimation, since extreme low temperatures are known to reduce crop yield and cause major losses to US farmers. We have also sequenced a leaf sample to compare its transcriptome profile with that of bud and fruit samples. Over 500,000 sequences were generated and assembled into approximately 15,000 contigs and were annotated and functionally mapped to Gene Ontology (GO) terms. A database was developed to house these sequences and their annotations. A web based interface was also developed to allow collaborators to search\browse the data and aid in the analysis and interpretation of the data. The availability of these sequences will allow for future advances, such as the development of a blueberry microarray to study gene expression, and will aid in the blueberry genome sequencing effort that is underway. This work was supported by grant 2008-51180-04861 from the USDA - Cooperative State Research, Education, and Extension Service (CSREES) Specialty Crop Research Initiative program.,
This resource organizes NCBI information, resources, data, and tools and utilities on genomes including sequences, maps, chromosomes, assemblies, and annotations. Sequence and map data from the whole genomes of organisms. The genomes represent both completely sequenced organisms and those for which sequencing is in progress.