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Hawaii Island Environmental Sampler Comparison 2016-2018
These data include metadata and associated data files associated with the manuscript, "Economical Environmental Sampler Designs for Detecting Airborne Spread of Fungi Responsible for Rapid Ohia Death." These data include a total of 8 datasets used for both controlled and field studies evaluating the use of Active (with battery operated fan) and Passive (dependent on wind) USGS Environmental Samplers on Hawaii Island between 2016-2018. Samplers were operated under controlled laboratory and field conditions with a commercial sampler (Rotorod Model 20) to compare efficacy in capturing synthetic polyethylene spheres (12 - 160 µm in diameter) and also Xyleborus spp. boring dust (frass) known to contain the fungi responsible for Rapid Ohia Death (Ceratocystis lukuohia and C. huliohia). Samplers were also tested at a field site with confirmed ROD mortality to demonstrate their ability to detect Ceratocystis DNA in beetle frass from infected trees and wood chips associated with tree felling under a range of environmental conditions. Data files consists of particle counts, particle measurements, and results of qPCR (quantitative polymerase chain reaction) tests to determine presence or absence of Ceratocystis DNA on tape strips that were exposed in samplers and tape strips that were spiked with known numbers of Ceratocystis spores to determine sensitivity of the methodology.
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Hawaii Island airborne detection of fungal pathogens of Ohia, 2016-2017
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This data release includes metadata and tabular datasets that document (1) Austropuccina, Ceratocystis and Myrtaceae qPCR (quantitative polymerase chain reaction) DNA detections in Passive Environmental Samplers (PES), (2) wind speed, wind gust speed, and wind direction measurements collected at two sites in the Kahuku Unit of Hawai'i Volcanoes National Park (HAVO) where paired PES were located, (3) localities, sites and elevations where PES were located, and (4) Genbank accession numbers for Austropuccinia and Ceratocystis DNA sequences amplified from samples collected in a subset of PES. These raw data were analyzed and reported in the manuscript "Environmental Monitoring for Invasive Fungal Pathogens of ʽŌhiʽa (Metrosideros polymorpha) on the Island of Hawaiʽi".
Hawaiian Islands Ceratocystis rapid ohia death spatial analysis 2019
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Hawaiʹi’s most widespread native tree, ʹōhiʹa lehua (Metrosideros polymorpha), has been dying across large areas of Hawaiʹi Island mainly due to two fungal pathogens (Ceratocystis lukuohia and Ceratocystis huliohia) that cause a disease collectively known as Rapid ʹŌhiʹa Death (ROD). Here we examine patterns of positive detections of C. lukuohia as it has been linked to the larger mortality events across Hawaiʹi Island. Our analysis compares the environmental range of C. lukuohia and its spread over time through the known climatic range and distribution of ʹōhiʹa. This data release consists of two rasters, one containing the projected suitability for C.lukuohia and another consisting of modeled presence/absence across the main Hawaiian Islands under current climatic conditions. This distribution model for C. lukuohia was generated using maxent using methods described in Fortini et. al 2019 (Forest Ecology and Management). Full citation is listed in the larger work section of this XML file.
Ceratocystis lukuohia spore dilution for probit analysis
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Environmental DNA (eDNA) detection tools are becoming increasingly popular for documenting occurrence and distribution of native and invasive species. These tools can allow early detection of new diseases and invasive species and provide critical information for land management. We designed two new samplers for monitoring airborne particulates, including fungal and fern spores and plant pollen, that rely on natural wind currents (Passive Environmental Sampler) or a battery operated fan (Active Environmental Sampler). This dataset contains results of an experiment that was designed to determine probability of detecting known numbers of Ceratocystis lukuohia spores on individual slides in these samplers.
Ceratocystis DNA Detection in Frass During Caged Sampler Comparison
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We designed two new samplers for monitoring airborne particulates, including fungal and fern spores and plant pollen, that rely on natural wind currents (Passive Environmental Sampler) or a battery operated fan (Active Environmental Sampler). Both samplers are modeled after commercial devices such as the Rotorod® and the Burkard® samplers, but are more economical and require less maintenance than commercial devices. We compared our two new samplers to Rotorod® samplers using Xyleborus spp. boring dust known to contain ROD causing pathogens. The comparison was done in a large outdoor field cage to determine relative effectiveness of the three samplers for capturing windblown boring dust. The dataset contains results of quantitative PCR (qPCR) tests to determine presence of Ceratocystis lukuohia, Ceratocystis huliohia, and Metrosideros polymorpha DNA in the samplers after release of boring dust over the course of twelve trials where position of samplers was rotated.
Hawaiian Islands Ceratocystis luhuohia modeled habitat suitability
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Hawaiʹi’s most widespread native tree, ʹōhiʹa lehua (Metrosideros polymorpha), has been dying across large areas of Hawaiʹi Island mainly due to two fungal pathogens (Ceratocystis lukuohia and Ceratocystis huliohia) that cause a disease collectively known as Rapid ʹŌhiʹa Death (ROD). Here we examine patterns of positive detections of C. lukuohia as it has been linked to the larger mortality events across Hawaiʹi Island. Our analysis compares the environmental range of C. lukuohia and its spread over time through the known climatic range and distribution of ʹōhiʹa. This data set is a georeferenced raster file, containing the projected suitability for C.lukuohia across the main Hawaiian Islands using climatic variables that varied consistently with C. lukuohia prevalence (Mean annual precipication and minimum temperature of coldest month) at 500 meter resolution. This C. lukuohia habitat suitability was generated using maxent using methods described in Fortini et. al 2019 (Forest Ecology and Management). Full citation is listed in the larger work section of this XML file.
Study Site Information
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These data contain the study site locations and elevation information where bolts (tree stem sections) infected with Ceratocystis lukuohia and/or C. huliohia were collected on Hawai'i Island.
Hawaiʻi Island Rapid ʻŌhiʻa Death Ambrosia Beetle Communities and Frass 2018-2019
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This data release includes data and metadata containing (1) study site locations and elevation where bolts (tree stem sections) infected with Ceratocystis lukuohia and/or C. huliohia were collected on Hawai'i Island, (2) the ambrosia beetle (Coleoptera: Scolytinae) species that were reared from bolts, (3) Ceratocystis spp. viability results from culturing tests of the beetles' frass, (4) frass production estimates from three ambrosia beetle species, and (5) quantitative Polymerase Chain Reaction (qPCR) DNA results of viability subcultures. Data were used in the analysis for the manuscript "Ambrosia beetle communities and frass production in ʻōhiʻa (Metrosideros polymorpha) infected with Ceratocystis fungi responsible for Rapid ʻŌhiʻa Death." Beetles and frass were collected in the lab from Rapid 'Ōhiʻa Death-infected trees from 2018-2019.
Assessment of standing ‘ōhi‘a trees infected with Ceratocystis wilt of ‘ōhi‘a, Island of Hawai‘i, 2014 - 2021
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This data release includes metadata and tabular data that describes 119 ‘ōhi‘a trees examined during this study. Each tree had been documented to have died from Ceratocystis lukuohia during 2014 - 2019. Each tree was reexamined for viable C. lukuohia and signs of active ambrosia beetle galleries during 2020 - 2021.
Frass viability of ROD-infected ohia, Hawaii, 2019-2021
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This data release includes metadata and tabular data that describes results of testing beetle frass collected in BDT (boring dust traps) for viable Ceratocystis lukuohia. Frass was collected in BDTs that were placed over the entrances of active beetle galleries.