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Phenotyping ofCampylobacter jejuniandCampylobacter coliby a quantitative antibiogram [MIC] typing scheme using Euclidean distances [QATED]
Background Enteropathogenic Campylobacter jejuni and C. coli are presently the most common cause of acute bacterial gastroenteritis in the developed world. An understanding of sources and means of transmission of Campylobacter is an essential factor in order to reduce the incidence of Campylobacter-related gastroenteritis in man. Consequently a reproducible, sensitive and well-standardised typing scheme is critical in the successful discrimination of strains and in the subsequent investigations of outbreaks. For this purpose, a phenotypic typing scheme based on quantitative antibiogram determination based on Euclidean distance (QATED), was developed. Results and Conclusion The results obtained with this typing scheme demonstrated that individual livers of colonized pigs could be infected with multiple strains of Campylobacter spp. and subspecies types. In conclusion, phenotyping of Campylobacter jejuni and C. coli by QATED is a simple, inexpensive and discriminatory sub-species characterisation scheme, which may be useful in primary diagnostic clinical laboratories, where no specialist Campylobacter phenotyping or molecular genotyping schemes exist. It is especially suitable for food-bome outbreak investigations in the community, where a rapid and local response is required to aid with public health epidemiological investigations.
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Data from: Survey of CRISPR spacers among greater than 35,000 Campylobacter spp. genomes both recognizes known bacteriophages and suggests novel bacteriophages
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,"Survey of CRISPR spacers among greater than 35,000 Campylobacter spp. genomes both recognizes known bacteriophages and suggests novel bacteriophages" study.,Extended dataset 1: DA10 bacteriophage gene prevalence in targets.,Extended dataset 2: Fletchervirus bacteriophage gene prevalence in targets.,
Virulence and infectious assessment of a Campylobacter jejuni strain isolated from California gull
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Genome sequence, PCR clone sequences and qPCR data, culture data
Microbial Observatory (ISS-MO): Study of BSL-2 bacterial isolates from the International Space Station
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In an on-going Microbial Observatory experimental investigation on the International Space Station (ISS) multiple bacterial isolates of Biosafety Level 2 (BSL-2) were isolated and identified. The antibiotic susceptibility pattern was tested in these BSL-2 isolates for the following antibiotics: cefazolin ciprofloxacin cefoxitin erythromycin gentamycin oxacillin penicillin rifampin tobramycin and many of the BSL-2 isolates showed multiple drug resistance. Among these isolates 21 strains were chosen for whole genome sequencing (WGS) for a possible lead to develop appropriate countermeasures. In addition the genomic data would enable to determine the influence of microgravity on the pathogenicity and virulence in the BSL-2 microorganisms.
qPCR mastersheet-mod-no-CoV2
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This data set contains information on the concentration of selected gastrointestinal viral and bacterial pathogens extracted from raw wastewater. This dataset is associated with the following publication: Wu, H., M.A. Juel, S. Eytcheson, T.G. Aw, M. Munir, and M. Molina. Temporal and spatial relationships of CrAssphage and enteric viral and bacterial pathogens in wastewater in North Carolina. WATER RESEARCH. Elsevier Science Ltd, New York, NY, USA, 239: 120008, (2023).
Fecal bacteria and microbial source tracking marker data in the Rio Grande, Albuquerque, New Mexico 2017-2020
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The dataset includes bacteria concentrations and microbial source indicator concentrations collected by Daniel B. Stephens and Associates, Inc. on behalf of the City of Albuquerque in the Middle Rio Grande in Albuquerque, NM, in 2018. These data are a subset of data from the City of Albuquerque, 2019, FY19 MS4 Annual Report: Microbial Source Tracking Study, p. 464-621, accessed November 30, 2021 at https://documents.cabq.gov/municipal-development/city-of-albuquerque-fy19-ms4-annual-report-nmr04A014.pdf