Plains bison SNP data for monitoring conservation herds
공공데이터포털
We developed and report a microsatellite data set composed of 52 microsatellite loci for 2305 individuals from 20 bison conservation herds (17 US federal, 1 tribal, 2 Canadian) and a single nucleotide polymorphism (SNP) data set composed of 5013 biallic loci for 376 individuals from 16 bison conservation herds that were used as part of a broader study. We also developed an algorithm to select a subset of SNPs that captures the genetic variation present in the full SNP data set. Human expansion is a major driver of both declining wildlife species abundance and the contraction of species’ distributions, increasing the risk of genetic erosion and the need for genetic monitoring. Rapidly advancing technology has expanded the types of genetic data that are available for wildlife conservation. However, the use of different genetic markers could result in different management decisions and, thus, must be considered carefully. Rebounding from near extinction in the early 1900s, the majority of plains bison (Bison bison bison) are managed as small and isolated herds. Microsatellite-based analyses are currently used to inform management of the US federal bison conservation herds. Transitioning from monitoring with tens of multiallelic loci (e.g., microsatellite loci) to thousands of biallelic loci (e.g., SNP loci) could increase genotyping efficiency and improve the precision of population genetic inference but would require an understanding of the inferential differences between genetic marker types.
Plains bison genetic data and genetic locus panel selection algorithm for monitoring conservation herds
공공데이터포털
We developed and report a microsatellite data set composed of 52 microsatellite loci for 2305 individuals from 20 bison conservation herds (17 US federal, 1 tribal, 2 Canadian) and a single nucleotide polymorphism (SNP) data set composed of 5013 biallic loci for 376 individuals from 16 bison conservation herds that were used as part of a broader study. We also developed an algorithm to select a subset of SNPs that captures the genetic variation present in the full SNP data set. Human expansion is a major driver of both declining wildlife species abundance and the contraction of species’ distributions, increasing the risk of genetic erosion and the need for genetic monitoring. Rapidly advancing technology has expanded the types of genetic data that are available for wildlife conservation. However, the use of different genetic markers could result in different management decisions and, thus, must be considered carefully. Rebounding from near extinction in the early 1900s, the majority of plains bison (Bison bison bison) are managed as small and isolated herds. Microsatellite-based analyses are currently used to inform management of the US federal bison conservation herds. Transitioning from monitoring with tens of multiallelic loci (e.g., microsatellite loci) to thousands of biallelic loci (e.g., SNP loci) could increase genotyping efficiency and improve the precision of population genetic inference but would require an understanding of the inferential differences between genetic marker types.
Plains bison genetic locus panel selection algorithm for monitoring conservation herds
공공데이터포털
We developed and report a microsatellite data set composed of 52 microsatellite loci for 2305 individuals from 20 bison conservation herds (17 US federal, 1 tribal, 2 Canadian) and a single nucleotide polymorphism (SNP) data set composed of 5013 biallic loci for 376 individuals from 16 bison conservation herds that were used as part of a broader study. We also developed an algorithm to select a subset of SNPs that captures the genetic variation present in the full SNP data set. Human expansion is a major driver of both declining wildlife species abundance and the contraction of species’ distributions, increasing the risk of genetic erosion and the need for genetic monitoring. Rapidly advancing technology has expanded the types of genetic data that are available for wildlife conservation. However, the use of different genetic markers could result in different management decisions and, thus, must be considered carefully. Rebounding from near extinction in the early 1900s, the majority of plains bison (Bison bison bison) are managed as small and isolated herds. Microsatellite-based analyses are currently used to inform management of the US federal bison conservation herds. Transitioning from monitoring with tens of multiallelic loci (e.g., microsatellite loci) to thousands of biallelic loci (e.g., SNP loci) could increase genotyping efficiency and improve the precision of population genetic inference but would require an understanding of the inferential differences between genetic marker types.
Quantile bands for GPS locations of bison (Bos bison) at Tallgrass Prairie National Preserve, 2021-2023
공공데이터포털
This GIS shapefile, "quantile_bands," is derived from a parent shapefile, "density_contours," which describes 1) a bison study area at Tallgrass Prairie National Preserve, Kansas, and 2) 25%, 50%, 75%, and 99% kernel density contours for locations of bison marked with GPS collars during 2021-2023. Percentages associated with parent contours describe nominal coverage, i.e., proportions of observations they are expected to encompass, and approximate the distribution of bison activity within the study area. Each contour encompasses lower-coverage contours: the 75% contour, for example, encompasses the 50% and 25% contours but not the 99% contour. Quantile bands correspond with intervals between contours in "density_contours." Each of the first 4 bands encompasses approximately 25% of bison locations. Percentages associated with contours describe nominal coverage, i.e., quantiles the bands are expected to encompass. Bands comprise a partition of the bison study area and do not overlap. Users are advised that ground conditions within the study area may change over time, leading to changes in bison distribution.
Microsatellite genetic marker genotypes from southern mule deer (Odocoileus hemionus fuliginatus) sampled in San Diego County, California
공공데이터포털
Collection of microsatellite genetic data from multiple projects involving southern mule deer (Odocoileus hemionus fuliginatus) in San Diego County, California. Samples were collected 2005-2007, 2010, 2012-2013, 2015, and 2018-2020.
Microsatellite genetic marker genotypes from southern mule deer (Odocoileus hemionus fuliginatus) sampled in San Diego County, California
공공데이터포털
Collection of microsatellite genetic data from multiple projects involving southern mule deer (Odocoileus hemionus fuliginatus) in San Diego County, California. Samples were collected 2005-2007, 2010, 2012-2013, 2015, and 2018-2020.